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1B5B
Asym. Unit
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(1)
Title
:
RAT FERROCYTOCHROME B5 B CONFORMATION, NMR, 1 STRUCTURE
Authors
:
B. Dangi, S. Sarma, C. Yan, D. Banville, R. D. Guiles
Date
:
06 Apr 98 (Deposition) - 17 Jun 98 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Dangi, S. Sarma, C. Yan, D. L. Banville, R. D. Guiles
The Origin Of Differences In The Physical Properties Of The Equilibrium Forms Of Cytochrome B5 Revealed Through High-Resolution Nmr Structures And Backbone Dynamic Analyses.
Biochemistry V. 37 8289 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
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No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:23 , PHE A:35 , HIS A:39 , PRO A:40 , GLY A:41 , VAL A:45 , LEU A:46 , ALA A:54 , ASN A:57 , VAL A:61 , HIS A:63 , SER A:64 , SER A:71
BINDING SITE FOR RESIDUE HEM A 95
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_B5_2 (A:4-80)
2: CYTOCHROME_B5_1 (A:35-42)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_B5_2
PS50255
Cytochrome b5 family, heme-binding domain profile.
CYB5_RAT
9-85
1
A:4-80
2
CYTOCHROME_B5_1
PS00191
Cytochrome b5 family, heme-binding domain signature.
CYB5_RAT
40-47
1
A:35-42
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:1-38)
Exon 1.2 (A:39-81)
Exon 1.3 (A:82-91)
Exon 1.5 (A:92-94)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.5
5: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000020446
1
ENSRNOE00000145553
chr18:
81415962-81416156
195
CYB5_RAT
1-43
43
1
A:1-38
38
1.2
ENSRNOT00000020446
2
ENSRNOE00000218963
chr18:
81434867-81434995
129
CYB5_RAT
44-86
43
1
A:39-81
43
1.3
ENSRNOT00000020446
3
ENSRNOE00000145848
chr18:
81436683-81436712
30
CYB5_RAT
87-96
10
1
A:82-91
10
1.5
ENSRNOT00000020446
5
ENSRNOE00000145949
chr18:
81449591-81449625
35
CYB5_RAT
97-108
12
1
A:92-94
3
1.6
ENSRNOT00000020446
6
ENSRNOE00000145993
chr18:
81452246-81452606
361
CYB5_RAT
108-134
27
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1b5ba_ (A:)
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)
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)
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cytochrome b5-like heme/steroid binding domain
(64)
Superfamily
:
Cytochrome b5-like heme/steroid binding domain
(64)
Family
:
Cytochrome b5
(57)
Protein domain
:
Cytochrome b5
(38)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(20)
1a
d1b5ba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1b5bA00 (A:1-94)
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)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Flavocytochrome B2; Chain A, domain 1
(56)
Homologous Superfamily
:
Flavocytochrome B2, subunit A, domain 1
(56)
Norway rat (Rattus norvegicus)
(20)
1a
1b5bA00
A:1-94
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Pfam Domains
(0, 0)
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