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1B4N
Asym. Unit
Info
Asym.Unit (401 KB)
Biol.Unit 1 (393 KB)
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(1)
Title
:
FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS, COMPLEXED WITH GLUTARATE
Authors
:
Y. L. Hu, S. Faham, R. Roy, M. W. W. Adams, D. C. Rees
Date
:
24 Dec 98 (Deposition) - 18 May 99 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Tungstoenzyme, Moco, Tungsten Containing Protein, Hyperthermophile
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Hu, S. Faham, R. Roy, M. W. Adams, D. C. Rees
Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus Furiosus: The 1. 85 A Resolution Crystal Structure And Its Mechanistic Implications.
J. Mol. Biol. V. 286 899 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLUTARIC ACID (GUAa)
2b: GLUTARIC ACID (GUAb)
2c: GLUTARIC ACID (GUAc)
2d: GLUTARIC ACID (GUAd)
3a: TUNGSTOPTERIN COFACTOR (PTEa)
3b: TUNGSTOPTERIN COFACTOR (PTEb)
3c: TUNGSTOPTERIN COFACTOR (PTEc)
3d: TUNGSTOPTERIN COFACTOR (PTEd)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
4c: IRON/SULFUR CLUSTER (SF4c)
4d: IRON/SULFUR CLUSTER (SF4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GUA
4
Ligand/Ion
GLUTARIC ACID
3
PTE
4
Ligand/Ion
TUNGSTOPTERIN COFACTOR
4
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
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]
Sites
(24, 24)
Info
All Sites
01: A1 (UNKNOWN)
02: A2 (UNKNOWN)
03: AC1 (SOFTWARE)
04: AC2 (SOFTWARE)
05: AC3 (SOFTWARE)
06: AC4 (SOFTWARE)
07: AC5 (SOFTWARE)
08: AC6 (SOFTWARE)
09: AC7 (SOFTWARE)
10: AC8 (SOFTWARE)
11: AC9 (SOFTWARE)
12: B1 (UNKNOWN)
13: B2 (UNKNOWN)
14: BC1 (SOFTWARE)
15: BC2 (SOFTWARE)
16: BC3 (SOFTWARE)
17: BC4 (SOFTWARE)
18: BC5 (SOFTWARE)
19: BC6 (SOFTWARE)
20: BC7 (SOFTWARE)
21: C1 (UNKNOWN)
22: C2 (UNKNOWN)
23: D1 (UNKNOWN)
24: D2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
A1
UNKNOWN
ASP A:333
FIRST MOLYBDOPTERIN BINDING MOTIF
02
A2
UNKNOWN
GLU A:486
SECOND MOLYBDOPTERIN BINDING MOTIF
03
AC1
SOFTWARE
GLY A:179 , GLU A:304 , ASP A:306 , PTE A:623 , HOH A:660 , HOH A:661
BINDING SITE FOR RESIDUE CA A 620
04
AC2
SOFTWARE
GLY B:179 , GLU B:304 , ASP B:306 , PTE B:623 , HOH B:668 , HOH B:669
BINDING SITE FOR RESIDUE CA B 620
05
AC3
SOFTWARE
GLY C:179 , GLU C:304 , ASP C:306 , PTE C:623 , HOH C:671 , HOH C:672
BINDING SITE FOR RESIDUE CA C 620
06
AC4
SOFTWARE
GLY D:179 , GLU D:304 , ASP D:306 , PTE D:623 , HOH D:673 , HOH D:674
BINDING SITE FOR RESIDUE CA D 620
07
AC5
SOFTWARE
SER A:72 , LYS A:75 , GLY A:283 , CYS A:284 , CYS A:287 , MET A:289 , CYS A:291 , CYS A:491 , PTE A:623
BINDING SITE FOR RESIDUE SF4 A 621
08
AC6
SOFTWARE
TYR A:307 , GLU A:308 , TYR A:416 , HIS A:437 , ARG A:481 , ARG A:492 , LEU A:493 , VAL A:496 , PTE A:623 , HOH A:631
BINDING SITE FOR RESIDUE GUA A 622
09
AC7
SOFTWARE
LYS A:75 , GLY A:91 , ASN A:92 , LEU A:93 , GLY A:94 , GLY A:179 , ARG A:180 , ALA A:181 , ALA A:182 , GLY A:183 , ARG A:184 , ASP A:306 , GLU A:308 , ASN A:309 , ASP A:333 , MET A:337 , ASP A:338 , THR A:339 , ILE A:340 , HIS A:436 , HIS A:437 , LYS A:438 , PHE A:485 , GLU A:486 , ALA A:490 , CYS A:491 , ARG A:492 , CA A:620 , SF4 A:621 , GUA A:622 , HOH A:632 , HOH A:640 , HOH A:650 , HOH A:657 , HOH A:658 , HOH A:659 , HOH A:660 , HOH A:661
BINDING SITE FOR RESIDUE PTE A 623
10
AC8
SOFTWARE
SER B:72 , LYS B:75 , GLY B:283 , CYS B:284 , CYS B:287 , CYS B:291 , CYS B:491 , PTE B:623
BINDING SITE FOR RESIDUE SF4 B 621
11
AC9
SOFTWARE
TYR B:307 , GLU B:308 , TYR B:416 , HIS B:437 , ARG B:481 , ARG B:492 , PTE B:623
BINDING SITE FOR RESIDUE GUA B 622
12
B1
UNKNOWN
ASP B:333
FIRST MOLYBDOPTERIN BINDING MOTIF
13
B2
UNKNOWN
GLU B:486
SECOND MOLYBDOPTERIN BINDING MOTIF
14
BC1
SOFTWARE
LYS B:75 , GLY B:91 , ASN B:92 , LEU B:93 , GLY B:94 , GLY B:179 , ARG B:180 , ALA B:181 , ALA B:182 , GLY B:183 , ARG B:184 , ASP B:306 , GLU B:308 , ASN B:309 , ASP B:333 , MET B:337 , ASP B:338 , THR B:339 , HIS B:436 , HIS B:437 , LYS B:438 , PHE B:485 , GLU B:486 , ALA B:490 , CYS B:491 , ARG B:492 , CA B:620 , SF4 B:621 , GUA B:622 , HOH B:624 , HOH B:629 , HOH B:630 , HOH B:666 , HOH B:667 , HOH B:668 , HOH B:669
BINDING SITE FOR RESIDUE PTE B 623
15
BC2
SOFTWARE
SER C:72 , LYS C:75 , GLY C:283 , CYS C:284 , CYS C:287 , MET C:289 , PRO C:290 , CYS C:291 , CYS C:491 , PTE C:623
BINDING SITE FOR RESIDUE SF4 C 621
16
BC3
SOFTWARE
TYR C:307 , GLU C:308 , TYR C:416 , HIS C:437 , ARG C:481 , ARG C:492 , LEU C:493 , VAL C:496 , GLU C:497 , PTE C:623
BINDING SITE FOR RESIDUE GUA C 622
17
BC4
SOFTWARE
LYS C:75 , GLY C:91 , ASN C:92 , LEU C:93 , GLY C:94 , GLY C:179 , ARG C:180 , ALA C:181 , ALA C:182 , GLY C:183 , ARG C:184 , ASP C:306 , GLU C:308 , ASN C:309 , ALA C:332 , ASP C:333 , MET C:337 , ASP C:338 , THR C:339 , ILE C:340 , HIS C:436 , HIS C:437 , LYS C:438 , PHE C:485 , GLU C:486 , ALA C:490 , CYS C:491 , ARG C:492 , CA C:620 , SF4 C:621 , GUA C:622 , HOH C:657 , HOH C:666 , HOH C:669 , HOH C:670 , HOH C:672
BINDING SITE FOR RESIDUE PTE C 623
18
BC5
SOFTWARE
ARG D:180 , GLY D:283 , CYS D:284 , CYS D:287 , MET D:289 , CYS D:291 , CYS D:491 , PTE D:623
BINDING SITE FOR RESIDUE SF4 D 621
19
BC6
SOFTWARE
TYR D:307 , GLU D:308 , TYR D:416 , HIS D:437 , TRP D:441 , ARG D:481 , ARG D:492 , LEU D:493 , VAL D:496 , GLU D:497 , PTE D:623
BINDING SITE FOR RESIDUE GUA D 622
20
BC7
SOFTWARE
LYS D:75 , GLY D:91 , ASN D:92 , LEU D:93 , GLY D:94 , GLY D:179 , ARG D:180 , ALA D:181 , ALA D:182 , GLY D:183 , ARG D:184 , ASP D:306 , GLU D:308 , ASN D:309 , ALA D:332 , ASP D:333 , MET D:337 , ASP D:338 , THR D:339 , ILE D:340 , HIS D:436 , HIS D:437 , LYS D:438 , PHE D:485 , GLU D:486 , ALA D:490 , CYS D:491 , ARG D:492 , CA D:620 , SF4 D:621 , GUA D:622 , HOH D:634 , HOH D:642 , HOH D:671 , HOH D:672 , HOH D:673 , HOH D:674
BINDING SITE FOR RESIDUE PTE D 623
21
C1
UNKNOWN
ASP C:333
FIRST MOLYBDOPTERIN BINDING MOTIF
22
C2
UNKNOWN
GLU C:486
SECOND MOLYBDOPTERIN BINDING MOTIF
23
D1
UNKNOWN
ASP D:333
FIRST MOLYBDOPTERIN BINDING MOTIF
24
D2
UNKNOWN
GLU D:486
SECOND MOLYBDOPTERIN BINDING MOTIF
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1b4na1 (A:211-619)
1b: SCOP_d1b4nb1 (B:211-619)
1c: SCOP_d1b4nc1 (C:211-619)
1d: SCOP_d1b4nd1 (D:211-619)
2a: SCOP_d1b4na2 (A:1-210)
2b: SCOP_d1b4nb2 (B:1-210)
2c: SCOP_d1b4nc2 (C:1-210)
2d: SCOP_d1b4nd2 (D:1-210)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Superfamily
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Family
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Protein domain
:
Formaldehyde ferredoxin oxidoreductase
(2)
Pyrococcus furiosus [TaxId: 2261]
(2)
1a
d1b4na1
A:211-619
1b
d1b4nb1
B:211-619
1c
d1b4nc1
C:211-619
1d
d1b4nd1
D:211-619
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Superfamily
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Family
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Protein domain
:
Formaldehyde ferredoxin oxidoreductase
(2)
Pyrococcus furiosus [TaxId: 2261]
(2)
2a
d1b4na2
A:1-210
2b
d1b4nb2
B:1-210
2c
d1b4nc2
C:1-210
2d
d1b4nd2
D:1-210
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1b4nA01 (A:1-209)
1b: CATH_1b4nB01 (B:1-209)
1c: CATH_1b4nC01 (C:1-209)
1d: CATH_1b4nD01 (D:1-209)
2a: CATH_1b4nA02 (A:239-416)
2b: CATH_1b4nB02 (B:239-416)
2c: CATH_1b4nC02 (C:239-416)
2d: CATH_1b4nD02 (D:239-416)
3a: CATH_1b4nA03 (A:210-238,A:417-608)
3b: CATH_1b4nB03 (B:210-238,B:417-608)
3c: CATH_1b4nC03 (C:210-238,C:417-608)
3d: CATH_1b4nD03 (D:210-238,D:417-608)
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)
(
)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Aldehyde Ferredoxin Oxidoreductase; A, domain 1
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
1a
1b4nA01
A:1-209
1b
1b4nB01
B:1-209
1c
1b4nC01
C:1-209
1d
1b4nD01
D:1-209
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
2a
1b4nA02
A:239-416
2b
1b4nB02
B:239-416
2c
1b4nC02
C:239-416
2d
1b4nD02
D:239-416
Topology
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
3a
1b4nA03
A:210-238,A:417-608
3b
1b4nB03
B:210-238,B:417-608
3c
1b4nC03
C:210-238,C:417-608
3d
1b4nD03
D:210-238,D:417-608
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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