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1B33
Asym. Unit
Info
Asym.Unit (363 KB)
Biol.Unit 1 (179 KB)
Biol.Unit 2 (182 KB)
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(1)
Title
:
STRUCTURE OF LIGHT HARVESTING COMPLEX OF ALLOPHYCOCYANIN ALPHA AND BETA CHAINS/CORE-LINKER COMPLEX AP*LC7.8
Authors
:
W. Reuter, G. Wiegand, R. Huber, M. E. Than
Date
:
15 Dec 98 (Deposition) - 23 Feb 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C,D,E,F,N (1x)
Biol. Unit 2: H,I,J,K,L,M,O (1x)
Keywords
:
Light-Harvesting Protein, Cyanobacteria, Allophycocyanin, Linker Polypeptides, Complex Structure, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Reuter, G. Wiegand, R. Huber, M. E. Than
Structural Analysis At 2. 2 A Of Orthorhombic Crystals Presents The Asymmetry Of The Allophycocyanin-Linker Complex, Ap. Lc7. 8, From Phycobilisomes Of Mastigocladus Laminosus.
Proc. Natl. Acad. Sci. Usa V. 96 1363 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 22)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
2a: BORATE ION (BO4a)
2b: BORATE ION (BO4b)
2c: BORATE ION (BO4c)
2d: BORATE ION (BO4d)
3a: PHYCOCYANOBILIN (CYCa)
3b: PHYCOCYANOBILIN (CYCb)
3c: PHYCOCYANOBILIN (CYCc)
3d: PHYCOCYANOBILIN (CYCd)
3e: PHYCOCYANOBILIN (CYCe)
3f: PHYCOCYANOBILIN (CYCf)
3g: PHYCOCYANOBILIN (CYCg)
3h: PHYCOCYANOBILIN (CYCh)
3i: PHYCOCYANOBILIN (CYCi)
3j: PHYCOCYANOBILIN (CYCj)
4a: N-METHYL ASPARAGINE (MENa)
4b: N-METHYL ASPARAGINE (MENb)
4c: N-METHYL ASPARAGINE (MENc)
4d: N-METHYL ASPARAGINE (MENd)
4e: N-METHYL ASPARAGINE (MENe)
4f: N-METHYL ASPARAGINE (MENf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
2
Ligand/Ion
BILIVERDINE IX ALPHA
2
BO4
4
Ligand/Ion
BORATE ION
3
CYC
10
Ligand/Ion
PHYCOCYANOBILIN
4
MEN
6
Mod. Amino Acid
N-METHYL ASPARAGINE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:64 , ASN A:70 , ALA A:71 , MET A:76 , THR A:79 , CYS A:80 , ARG A:82 , ASP A:83 , TYR A:86 , TYR A:87 , ILE A:106 , MET A:114 , LEU A:118 , PRO A:121 , ALA A:124 , HOH A:206 , HOH A:248 , HOH A:249 , HOH A:258 , LEU F:61 , TYR F:62 , THR F:66 , TYR F:73 , THR F:74 , TYR F:78
BINDING SITE FOR RESIDUE BLA A 201
02
AC2
SOFTWARE
LEU B:60 , ILE B:65 , MEN B:71 , ARG B:76 , ARG B:77 , ALA B:80 , CYS B:81 , ARG B:83 , ASP B:84 , LEU B:85 , TYR B:87 , TYR B:88 , TYR B:91 , ARG B:107 , LEU B:112 , TYR B:116 , LEU B:119 , VAL B:121 , PRO B:122 , ALA B:125 , THR B:126 , HOH B:251 , SER N:12 , ARG N:20 , GLU N:21 , LEU N:22 , THR N:25 , HOH N:127
BINDING SITE FOR RESIDUE BLA B 202
03
AC3
SOFTWARE
TYR B:62 , THR B:66 , TYR B:73 , THR B:74 , HOH B:203 , VAL C:64 , ASN C:70 , ALA C:71 , MET C:76 , THR C:79 , CYS C:80 , ARG C:82 , ASP C:83 , TYR C:86 , TYR C:87 , MET C:114 , TYR C:115 , LEU C:118 , THR C:120 , ALA C:124 , HOH C:2019 , HOH C:2021 , HOH C:2051
BINDING SITE FOR RESIDUE CYC C 203
04
AC4
SOFTWARE
LEU D:60 , ILE D:65 , MEN D:71 , MET D:72 , ARG D:76 , ARG D:77 , ALA D:80 , CYS D:81 , ARG D:83 , ASP D:84 , TYR D:87 , TYR D:88 , TYR D:91 , ARG D:107 , LEU D:112 , TYR D:116 , LEU D:119 , VAL D:121 , PRO D:122 , ALA D:125 , HOH D:209 , HOH D:226 , HOH D:285 , HOH D:344 , ARG N:2 , TYR N:33 , PHE N:37 , GLN N:40 , GLN N:44 , HOH N:86
BINDING SITE FOR RESIDUE CYC D 204
05
AC5
SOFTWARE
TYR D:62 , THR D:66 , TYR D:73 , THR D:74 , TYR D:78 , VAL E:64 , ASN E:70 , ALA E:71 , MET E:76 , THR E:79 , CYS E:80 , ARG E:82 , ASP E:83 , TYR E:86 , TYR E:87 , MET E:114 , TYR E:115 , LEU E:118 , PRO E:121 , ALA E:124 , VAL E:125 , HOH E:2007 , HOH E:2025 , HOH E:2031 , HOH E:2061 , HOH E:2102
BINDING SITE FOR RESIDUE CYC E 205
06
AC6
SOFTWARE
ILE F:65 , MEN F:71 , MET F:72 , ARG F:76 , ARG F:77 , ALA F:80 , CYS F:81 , ARG F:83 , ASP F:84 , TYR F:88 , ARG F:107 , TYR F:116 , LEU F:119 , VAL F:121 , PRO F:122 , ALA F:125 , HOH F:296
BINDING SITE FOR RESIDUE CYC F 206
07
AC7
SOFTWARE
VAL H:64 , ASN H:70 , ALA H:71 , MET H:76 , THR H:79 , CYS H:80 , ARG H:82 , ASP H:83 , TYR H:86 , TYR H:87 , ILE H:106 , MET H:114 , TYR H:115 , LEU H:118 , THR H:120 , PRO H:121 , ALA H:124 , HOH H:214 , HOH H:225 , HOH H:239 , LEU M:61 , TYR M:62 , THR M:66 , TYR M:73 , THR M:74 , HOH M:219
BINDING SITE FOR RESIDUE CYC H 207
08
AC8
SOFTWARE
MEN I:71 , ARG I:77 , ALA I:80 , CYS I:81 , ARG I:83 , ASP I:84 , TYR I:87 , TYR I:88 , TYR I:91 , LEU I:112 , TYR I:116 , LEU I:119 , VAL I:121 , PRO I:122 , HOH I:222 , HOH I:227 , HOH I:240 , HOH I:308 , SER O:12 , ARG O:20 , GLU O:21 , LEU O:22 , THR O:25
BINDING SITE FOR RESIDUE CYC I 208
09
AC9
SOFTWARE
TYR I:62 , THR I:66 , TYR I:73 , THR I:74 , HOH I:218 , VAL J:64 , ASN J:70 , ALA J:71 , MET J:76 , CYS J:80 , ARG J:82 , ASP J:83 , TYR J:86 , TYR J:87 , ILE J:106 , MET J:114 , TYR J:115 , LEU J:118 , THR J:120 , ALA J:124 , HOH J:2012 , HOH J:2023 , HOH J:2025 , HOH J:2026
BINDING SITE FOR RESIDUE CYC J 209
10
BC1
SOFTWARE
LEU K:60 , MEN K:71 , ARG K:77 , ALA K:80 , CYS K:81 , ARG K:83 , ASP K:84 , TYR K:88 , TYR K:91 , ARG K:107 , LEU K:112 , TYR K:116 , LEU K:119 , VAL K:121 , PRO K:122 , HOH K:236 , HOH K:249 , ARG O:2 , TYR O:33 , PHE O:37 , GLN O:40 , GLN O:41 , HOH O:81
BINDING SITE FOR RESIDUE CYC K 210
11
BC2
SOFTWARE
TYR K:62 , THR K:66 , TYR K:73 , THR K:74 , THR K:75 , TYR K:78 , LEU L:57 , VAL L:64 , ASN L:70 , ALA L:71 , MET L:76 , THR L:79 , CYS L:80 , ARG L:82 , ASP L:83 , TYR L:86 , TYR L:87 , ILE L:106 , MET L:114 , LEU L:118 , THR L:120 , ALA L:124 , HOH L:2006 , HOH L:2028 , HOH L:2031 , HOH L:2034 , HOH L:2048 , HOH L:2099
BINDING SITE FOR RESIDUE CYC L 211
12
BC3
SOFTWARE
LEU M:60 , ILE M:65 , MEN M:71 , MET M:72 , ARG M:76 , ARG M:77 , ALA M:80 , CYS M:81 , ARG M:83 , ASP M:84 , TYR M:87 , TYR M:88 , TYR M:91 , ARG M:107 , LEU M:112 , TYR M:116 , LEU M:119 , VAL M:121 , PRO M:122 , ALA M:125 , HOH M:268 , HOH M:298 , HOH M:338
BINDING SITE FOR RESIDUE CYC M 212
13
BC4
SOFTWARE
GLY E:68 , SER L:18 , ARG L:24 , HOH L:2016 , HOH L:2035 , HOH L:2086
BINDING SITE FOR RESIDUE BO4 L 2001
14
BC5
SOFTWARE
SER J:18 , GLY J:20 , GLU J:21 , ARG J:24 , HOH J:2075 , HOH J:2107
BINDING SITE FOR RESIDUE BO4 J 2002
15
BC6
SOFTWARE
SER C:18 , GLY C:20 , GLU C:21 , ARG C:24 , HOH C:2018
BINDING SITE FOR RESIDUE BO4 C 2003
16
BC7
SOFTWARE
SER E:18 , GLY E:20 , ARG E:24 , HOH E:2077
BINDING SITE FOR RESIDUE BO4 E 2004
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PYC1_MASLA_001 (C9S, chain N/O, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PYC1_MASLA_001
*
C
9
S
PYC1_MASLA
---
---
N/O
C
9
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CPCD_LIKE (N:1-56,O:1-56)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CPCD_LIKE
PS51441
CpcD-like domain profile.
PYC1_MASLA
1-56
2
N:1-56
O:1-56
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 14)
Info
All SCOP Domains
1a: SCOP_d1b33a_ (A:)
1b: SCOP_d1b33c_ (C:)
1c: SCOP_d1b33e_ (E:)
1d: SCOP_d1b33h_ (H:)
1e: SCOP_d1b33j_ (J:)
1f: SCOP_d1b33l_ (L:)
2a: SCOP_d1b33b_ (B:)
2b: SCOP_d1b33d_ (D:)
2c: SCOP_d1b33f_ (F:)
2d: SCOP_d1b33i_ (I:)
2e: SCOP_d1b33k_ (K:)
2f: SCOP_d1b33m_ (M:)
3a: SCOP_d1b33n_ (N:)
3b: SCOP_d1b33o_ (O:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Allophycocyanin alpha subunit
(3)
Mastigocladus laminosus [TaxId: 83541]
(1)
1a
d1b33a_
A:
1b
d1b33c_
C:
1c
d1b33e_
E:
1d
d1b33h_
H:
1e
d1b33j_
J:
1f
d1b33l_
L:
Protein domain
:
Allophycocyanin beta subunit
(3)
Mastigocladus laminosus [TaxId: 83541]
(1)
2a
d1b33b_
B:
2b
d1b33d_
D:
2c
d1b33f_
F:
2d
d1b33i_
I:
2e
d1b33k_
K:
2f
d1b33m_
M:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Allophycocyanin linker chain (domain)
(1)
Superfamily
:
Allophycocyanin linker chain (domain)
(1)
Family
:
Allophycocyanin linker chain (domain)
(1)
Protein domain
:
Allophycocyanin linker chain (domain)
(1)
Mastigocladus laminosus [TaxId: 83541]
(1)
3a
d1b33n_
N:
3b
d1b33o_
O:
[
close SCOP info
]
CATH Domains
(2, 14)
Info
all CATH domains
1a: CATH_1b33N01 (N:1-55)
1b: CATH_1b33O01 (O:1-55)
2a: CATH_1b33B00 (B:1-161)
2b: CATH_1b33D00 (D:1-161)
2c: CATH_1b33J00 (J:1-160)
2d: CATH_1b33L00 (L:1-160)
2e: CATH_1b33F00 (F:1-161)
2f: CATH_1b33I00 (I:1-161)
2g: CATH_1b33K00 (K:1-161)
2h: CATH_1b33M00 (M:1-161)
2i: CATH_1b33A00 (A:1-160)
2j: CATH_1b33C00 (C:1-160)
2k: CATH_1b33E00 (E:1-160)
2l: CATH_1b33H00 (H:1-160)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
Phycocyanin-like phycobilisome proteins
(1)
Mastigocladus laminosus. Organism_taxid: 83541. Cell_line: pcc 7603.
(1)
1a
1b33N01
N:1-55
1b
1b33O01
O:1-55
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Mastigocladus laminosus. Organism_taxid: 83541. Cell_line: pcc 7603.
(1)
2a
1b33B00
B:1-161
2b
1b33D00
D:1-161
2c
1b33J00
J:1-160
2d
1b33L00
L:1-160
2e
1b33F00
F:1-161
2f
1b33I00
I:1-161
2g
1b33K00
K:1-161
2h
1b33M00
M:1-161
2i
1b33A00
A:1-160
2j
1b33C00
C:1-160
2k
1b33E00
E:1-160
2l
1b33H00
H:1-160
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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