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1B16
Asym. Unit
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Asym.Unit (96 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONENSIS TERNARY COMPLEX WITH NAD-3-PENTANONE
Authors
:
J. Benach, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
Date
:
25 Nov 98 (Deposition) - 29 Nov 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Detoxification, Metabolism, Alcohol Dehydrogenase, Drosophila Lebanonensis, Short-Chain Dehydrogenases/Reductases, Ternary Complex, Nad-3- Pentanone Adduct
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Benach, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
The Catalytic Reaction And Inhibition Mechanism Of Drosophila Alcohol Dehydrogenase: Observation Of An Enzyme-Bound Nad-Ketone Adduct At 1. 4 A Resolution By X-Ray Crystallography.
J. Mol. Biol. V. 289 335 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAQa)
1b: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAQb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAQ
2
Ligand/Ion
NICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (AUTHOR)
02: AC2 (AUTHOR)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: NA1 (AUTHOR)
06: NA2 (AUTHOR)
07: NA3 (AUTHOR)
08: NA4 (AUTHOR)
09: NA5 (AUTHOR)
10: NA6 (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
AUTHOR
SER A:138 , TYR A:151 , LYS A:155
ACTIVE SITE, CATALYIC TRIAD.
02
AC2
AUTHOR
SER B:138 , TYR B:151 , LYS B:155
ACTIVE SITE, CATALYIC TRIAD.
03
AC3
SOFTWARE
ALA A:12 , GLY A:15 , GLY A:16 , ILE A:17 , ASP A:37 , TYR A:62 , ASP A:63 , VAL A:64 , GLY A:91 , ALA A:92 , GLY A:93 , ILE A:106 , ILE A:136 , CYS A:137 , SER A:138 , VAL A:139 , ILE A:145 , TYR A:151 , LYS A:155 , PRO A:181 , GLY A:182 , ILE A:183 , THR A:184 , THR A:186 , LEU A:188 , HOH A:633 , HOH A:641 , HOH A:659 , HOH A:724 , HOH A:745 , HOH A:850
BINDING SITE FOR RESIDUE NAQ A 600
04
AC4
SOFTWARE
ALA B:12 , GLY B:15 , GLY B:16 , ILE B:17 , ASP B:37 , ARG B:38 , TYR B:62 , ASP B:63 , VAL B:64 , GLY B:91 , ALA B:92 , GLY B:93 , ILE B:106 , ILE B:136 , CYS B:137 , SER B:138 , VAL B:139 , ILE B:145 , TYR B:151 , LYS B:155 , PRO B:181 , GLY B:182 , ILE B:183 , THR B:184 , THR B:186 , LEU B:188 , HOH B:538 , HOH B:553 , HOH B:649 , HOH B:689 , HOH B:696
BINDING SITE FOR RESIDUE NAQ B 500
05
NA1
AUTHOR
ALA A:13 , GLY A:15 , GLY A:18
NAD BINDING MOTIF IN DADHS G(A)XGXXG
06
NA2
AUTHOR
ALA A:12 , GLY A:16 , GLY A:18
NAD BINDING MOTIF IN SDRS GXXXGXG
07
NA3
AUTHOR
ASP A:37
NAD/NADP SELECTIVITY AMINOACID
08
NA4
AUTHOR
ALA B:13 , GLY B:15 , GLY B:18
NAD BINDING MOTIF IN DADHS G(A)XGXXG
09
NA5
AUTHOR
ALA B:12 , GLY B:16 , GLY B:18
NAD BINDING MOTIF IN SDRS GXXXGXG
10
NA6
AUTHOR
ASP B:37
NAD/NADP SELECTIVITY AMINOACID
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:138-166,B:138-166)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
ADH_DROLE
138-166
2
A:138-166
B:138-166
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1b16a_ (A:)
1b: SCOP_d1b16b_ (B:)
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)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Drosophila alcohol dehydrogenase
(9)
Fly (Drosophila lebanonensis) [TaxId: 7225]
(8)
1a
d1b16a_
A:
1b
d1b16b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1b16A00 (A:1-254)
1b: CATH_1b16B00 (B:1-254)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Scaptodrosophila lebanonensis. Organism_taxid: 7225
(6)
1a
1b16A00
A:1-254
1b
1b16B00
B:1-254
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Pfam Domains
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Asymmetric Unit 1
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