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1AY4
Asym. Unit
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Asym.Unit (132 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
AROMATIC AMINO ACID AMINOTRANSFERASE WITHOUT SUBSTRATE
Authors
:
A. Okamoto, K. Hirotsu, H. Kagamiyama
Date
:
14 Nov 97 (Deposition) - 14 Oct 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Aminotransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Okamoto, Y. Nakai, H. Hayashi, K. Hirotsu, H. Kagamiyama
Crystal Structures Of Paracoccus Denitrificans Aromatic Amino Acid Aminotransferase: A Substrate Recognition Site Constructed By Rearrangement Of Hydrogen Bond Network.
J. Mol. Biol. V. 280 443 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
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No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:108 , THR A:109 , TRP A:140 , ASN A:194 , ASP A:222 , TYR A:225 , SER A:255 , SER A:257 , LYS A:258 , ARG A:266 , HOH A:522 , TYR B:70
BINDING SITE FOR RESIDUE PLP A 413
2
AC2
SOFTWARE
TYR A:70 , GLY B:108 , THR B:109 , TRP B:140 , ASN B:194 , ASP B:222 , ALA B:224 , TYR B:225 , SER B:255 , SER B:257 , LYS B:258 , ARG B:266
BINDING SITE FOR RESIDUE PLP B 413
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ay4a_ (A:)
1b: SCOP_d1ay4b_ (B:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
Aromatic aminoacid aminotransferase, AroAT
(17)
Paracoccus denitrificans [TaxId: 266]
(12)
1a
d1ay4a_
A:
1b
d1ay4b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ay4A02 (A:49-327)
1b: CATH_1ay4B02 (B:49-327)
2a: CATH_1ay4A01 (A:15-48,A:328-408)
2b: CATH_1ay4B01 (B:18-48,B:328-408)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Paracoccus denitrificans. Organism_taxid: 266. Strain: ifo12442.
(4)
1a
1ay4A02
A:49-327
1b
1ay4B02
B:49-327
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Paracoccus denitrificans. Organism_taxid: 266. Strain: ifo12442.
(4)
2a
1ay4A01
A:15-48,A:328-408
2b
1ay4B01
B:18-48,B:328-408
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Pfam Domains
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Asym.Unit (132 KB)
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