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1AXM
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (48 KB)
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(1)
Title
:
HEPARIN-LINKED BIOLOGICALLY-ACTIVE DIMER OF FIBROBLAST GROWTH FACTOR
Authors
:
A. D. Digabriele, I. Lax, D. I. Chen, C. M. Svahn, M. Jaye, J. Schlessinge W. A. Hendrickson
Date
:
16 Oct 97 (Deposition) - 22 Apr 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,F (1x)
Biol. Unit 3: C,E (1x)
Keywords
:
Human Acidic Fibroblast Growth Factor, Heparin Decasaccharide, Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Digabriele, I. Lax, D. I. Chen, C. M. Svahn, M. Jaye, J. Schlessinger, W. A. Hendrickson
Structure Of A Heparin-Linked Biologically Active Dimer Of Fibroblast Growth Factor.
Nature V. 393 812 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 21)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
1b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
1c: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSc)
1d: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSd)
1e: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSe)
1f: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSf)
1g: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSg)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
3b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
3c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
3d: N,O6-DISULFO-GLUCOSAMINE (SGNd)
3e: N,O6-DISULFO-GLUCOSAMINE (SGNe)
3f: N,O6-DISULFO-GLUCOSAMINE (SGNf)
3g: N,O6-DISULFO-GLUCOSAMINE (SGNg)
3h: N,O6-DISULFO-GLUCOSAMINE (SGNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IDS
7
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
SGN
8
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: HPA (UNKNOWN)
17: HPB (UNKNOWN)
18: HPC (UNKNOWN)
19: HPD (UNKNOWN)
20: HPE (UNKNOWN)
21: HPF (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:119 , ARG B:122 , IDS B:302
BINDING SITE FOR RESIDUE SGN B 301
02
AC2
SOFTWARE
ASN A:18 , LYS A:118 , GLN A:127 , LYS A:128 , ALA A:129 , LYS B:112 , SGN B:301 , SGN B:303 , HOH B:612 , HOH B:649
BINDING SITE FOR RESIDUE IDS B 302
03
AC3
SOFTWARE
ASN A:18 , LYS A:112 , LYS A:113 , LYS A:118 , ALA A:129 , LYS B:112 , LYS B:113 , ASN B:114 , IDS B:302 , IDS B:304
BINDING SITE FOR RESIDUE SGN B 303
04
AC4
SOFTWARE
ASN B:18 , LYS B:112 , LYS B:113 , LYS B:118 , SGN B:303 , SGN B:305
BINDING SITE FOR RESIDUE IDS B 304
05
AC5
SOFTWARE
ARG A:122 , LYS B:113 , LYS B:118 , GLN B:127 , LYS B:128 , ALA B:129 , IDS B:304
BINDING SITE FOR RESIDUE SGN B 305
06
AC6
SOFTWARE
ARG C:122 , IDS C:402
BINDING SITE FOR RESIDUE SGN C 401
07
AC7
SOFTWARE
LYS C:112 , SGN C:401 , SGN C:403 , ASN E:18 , LYS E:113 , GLN E:127 , LYS E:128 , ALA E:129
BINDING SITE FOR RESIDUE IDS C 402
08
AC8
SOFTWARE
LYS C:112 , LYS C:113 , ASN C:114 , IDS C:402 , IDS C:404 , ASN E:18 , LYS E:112 , LYS E:113 , LYS E:118
BINDING SITE FOR RESIDUE SGN C 403
09
AC9
SOFTWARE
ASN C:18 , LYS C:112 , LYS C:113 , LYS C:118 , SGN C:403 , SGN C:405
BINDING SITE FOR RESIDUE IDS C 404
10
BC1
SOFTWARE
LYS C:118 , GLN C:127 , LYS C:128 , ALA C:129 , IDS C:404
BINDING SITE FOR RESIDUE SGN C 405
11
BC2
SOFTWARE
LYS F:112 , ARG F:122 , SGN F:503
BINDING SITE FOR RESIDUE IDS F 502
12
BC3
SOFTWARE
LYS D:128 , LYS F:112 , LYS F:113 , ASN F:114 , IDS F:502 , IDS F:504
BINDING SITE FOR RESIDUE SGN F 503
13
BC4
SOFTWARE
LYS D:113 , LYS D:128 , HOH D:652 , ASN F:18 , LYS F:112 , LYS F:113 , LYS F:118 , SGN F:503 , SGN F:505
BINDING SITE FOR RESIDUE IDS F 504
14
BC5
SOFTWARE
LYS D:113 , LYS D:118 , GLN D:127 , HOH D:652 , LYS F:118 , GLN F:127 , LYS F:128 , ALA F:129 , IDS F:504 , IDS F:506 , HOH F:641
BINDING SITE FOR RESIDUE SGN F 505
15
BC6
SOFTWARE
ASN D:18 , LYS D:113 , LYS D:118 , LYS F:128 , SGN F:505
BINDING SITE FOR RESIDUE IDS F 506
16
HPA
UNKNOWN
ASN A:18 , LYS A:112 , LYS A:113 , ASN A:114 , GLY A:115 , SER A:116 , CYS A:117 , LYS A:118 , ARG A:119 , GLY A:120 , PRO A:121 , ARG A:122 , THR A:123 , HIS A:124 , TYR A:125 , GLY A:126 , GLN A:127 , LYS A:128
HEPARIN BINDING LOOP.
17
HPB
UNKNOWN
ASN B:18 , LYS B:112 , LYS B:113 , ASN B:114 , GLY B:115 , SER B:116 , CYS B:117 , LYS B:118 , ARG B:119 , GLY B:120 , PRO B:121 , ARG B:122 , THR B:123 , HIS B:124 , TYR B:125 , GLY B:126 , GLN B:127 , LYS B:128
HEPARIN BINDING LOOP.
18
HPC
UNKNOWN
ASN C:18 , LYS C:112 , LYS C:113 , ASN C:114 , GLY C:115 , SER C:116 , CYS C:117 , LYS C:118 , ARG C:119 , GLY C:120 , PRO C:121 , ARG C:122 , THR C:123 , HIS C:124 , TYR C:125 , GLY C:126 , GLN C:127 , LYS C:128
HEPARIN BINDING LOOP.
19
HPD
UNKNOWN
ASN D:18 , LYS D:112 , LYS D:113 , ASN D:114 , GLY D:115 , SER D:116 , CYS D:117 , LYS D:118 , ARG D:119 , GLY D:120 , PRO D:121 , ARG D:122 , THR D:123 , HIS D:124 , TYR D:125 , GLY D:126 , GLN D:127 , LYS D:128
HEPARIN BINDING LOOP.
20
HPE
UNKNOWN
ASN E:18 , LYS E:112 , LYS E:113 , ASN E:114 , GLY E:115 , SER E:116 , CYS E:117 , LYS E:118 , ARG E:119 , GLY E:120 , PRO E:121 , ARG E:122 , THR E:123 , HIS E:124 , TYR E:125 , GLY E:126 , GLN E:127 , LYS E:128
HEPARIN BINDING LOOP.
21
HPF
UNKNOWN
ASN F:18 , LYS F:112 , LYS F:113 , ASN F:114 , GLY F:115 , SER F:116 , CYS F:117 , LYS F:118 , ARG F:119 , GLY F:120 , PRO F:121 , ARG F:122 , THR F:123 , HIS F:124 , TYR F:125 , GLY F:126 , GLN F:127 , LYS F:128
HEPARIN BINDING LOOP.
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:71-94,B:71-94,C:71-94,D:71-94,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
6
A:71-94
B:71-94
C:71-94
D:71-94
E:71-94
F:71-94
[
close PROSITE info
]
Exons
(3, 18)
Info
All Exons
Exon 1.8b (A:9-42 | B:11-42 | C:10-42 | D:11-...)
Exon 1.9b (A:42-76 | B:42-76 | C:42-76 | D:42...)
Exon 1.10f (A:77-138 | B:77-137 | C:77-137 | D...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.8b
2: Boundary 1.8b/1.9b
3: Boundary 1.9b/1.10f
4: Boundary 1.10f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
1.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
6
A:9-42
B:11-42
C:10-42
D:11-42
E:10-42
F:10-42
34
32
33
32
33
33
1.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
6
A:42-76
B:42-76
C:42-76
D:42-76
E:42-76
F:42-76
35
35
35
35
35
35
1.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
6
A:77-138
B:77-137
C:77-137
D:77-137
E:77-138
F:77-138
62
61
61
61
62
62
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1axma_ (A:)
1b: SCOP_d1axmb_ (B:)
1c: SCOP_d1axmc_ (C:)
1d: SCOP_d1axmd_ (D:)
1e: SCOP_d1axme_ (E:)
1f: SCOP_d1axmf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d1axma_
A:
1b
d1axmb_
B:
1c
d1axmc_
C:
1d
d1axmd_
D:
1e
d1axme_
E:
1f
d1axmf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1axmA00 (A:9-138)
1b: CATH_1axmE00 (E:10-138)
1c: CATH_1axmF00 (F:10-138)
1d: CATH_1axmC00 (C:10-137)
1e: CATH_1axmB00 (B:11-137)
1f: CATH_1axmD00 (D:11-137)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
1a
1axmA00
A:9-138
1b
1axmE00
E:10-138
1c
1axmF00
F:10-138
1d
1axmC00
C:10-137
1e
1axmB00
B:11-137
1f
1axmD00
D:11-137
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Asym.Unit (141 KB)
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