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1AXI
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
STRUCTURAL PLASTICITY AT THE HGH:HGHBP INTERFACE
Authors
:
S. Atwell, M. Ultsch, A. M. De Vos, J. A. Wells
Date
:
15 Oct 97 (Deposition) - 28 Jan 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Complex (Hormone-Receptor), Complex (Hormone-Receptor) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Atwell, M. Ultsch, A. M. De Vos, J. A. Wells
Structural Plasticity In A Remodeled Protein-Protein Interface.
Science V. 278 1125 1997
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:148 , ILE B:149 , HIS B:150 , HOH B:456
BINDING SITE FOR RESIDUE SO4 B 237
[
close Site info
]
SAPs(SNPs)/Variants
(40, 40)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_015802 (D11N, chain A, )
02: VAR_015803 (R16C, chain A, )
03: VAR_015804 (T27I, chain A, )
04: VAR_018426 (C38S, chain B, )
05: VAR_018427 (S40L, chain B, )
06: VAR_015805 (K41R, chain A, )
07: VAR_002708 (E44K, chain B, )
08: VAR_015806 (N47D, chain A, )
09: VAR_018428 (W50R, chain B, )
10: VAR_032702 (C53S, chain A, )
11: VAR_015807 (S71F, chain A, )
12: VAR_002709 (R71K, chain B, )
13: VAR_015808 (E74K, chain A, )
14: VAR_015809 (R77C, chain A, )
15: VAR_011918 (S79C, chain A, )
16: VAR_015810 (Q91L, chain A, )
17: VAR_002710 (F96S, chain B, )
18: VAR_015811 (S108C, chain A, )
19: VAR_015812 (S108R, chain A, )
20: VAR_011919 (V110I, chain A, )
21: VAR_015813 (D112G, chain A, )
22: VAR_002711 (V125A, chain B, )
23: VAR_018429 (P131Q, chain B, )
24: VAR_002712 (V144D, chain B, )
25: VAR_020002 (V144F, chain B, )
26: VAR_018430 (V144I, chain B, )
27: VAR_002713 (D152H, chain B, )
28: VAR_018431 (I153T, chain B, )
29: VAR_018432 (Q154P, chain B, )
30: VAR_018433 (V155G, chain B, )
31: VAR_002714 (R161C, chain B, )
32: VAR_013937 (R161H, chain B, )
33: VAR_015814 (T175A, chain A, )
34: VAR_032703 (I179M, chain A, )
35: VAR_015815 (R183H, chain A, )
36: VAR_018434 (Y208C, chain B, )
37: VAR_002715 (R211G, chain B, )
38: VAR_013938 (R211H, chain B, )
39: VAR_002716 (E224D, chain B, )
40: VAR_018435 (S226I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_015802
D
37
N
SOMA_HUMAN
Disease (IGHD1B)
---
A
D
11
N
02
UniProt
VAR_015803
R
42
C
SOMA_HUMAN
Disease (IGHD1B)
---
A
R
16
C
03
UniProt
VAR_015804
T
53
I
SOMA_HUMAN
Disease (IGHD1B)
---
A
T
27
I
04
UniProt
VAR_018426
C
56
S
GHR_HUMAN
Disease (LARS)
---
B
C
38
S
05
UniProt
VAR_018427
S
58
L
GHR_HUMAN
Disease (LARS)
---
B
S
40
L
06
UniProt
VAR_015805
K
67
R
SOMA_HUMAN
Disease (IGHD1B)
---
A
K
41
R
07
UniProt
VAR_002708
E
62
K
GHR_HUMAN
Disease (GHIP)
---
B
E
44
K
08
UniProt
VAR_015806
N
73
D
SOMA_HUMAN
Disease (IGHD1B)
---
A
N
47
D
09
UniProt
VAR_018428
W
68
R
GHR_HUMAN
Disease (LARS)
---
B
W
50
R
10
UniProt
VAR_032702
C
79
S
SOMA_HUMAN
Unclassified
---
A
C
53
S
11
UniProt
VAR_015807
S
97
F
SOMA_HUMAN
Disease (IGHD1B)
---
A
S
71
F
12
UniProt
VAR_002709
R
89
K
GHR_HUMAN
Disease (LARS)
---
B
R
71
K
13
UniProt
VAR_015808
E
100
K
SOMA_HUMAN
Disease (IGHD1B)
---
A
E
74
K
14
UniProt
VAR_015809
R
103
C
SOMA_HUMAN
Disease (KWKS)
---
A
R
77
C
15
UniProt
VAR_011918
S
105
C
SOMA_HUMAN
Polymorphism
6174
A
S
79
C
16
UniProt
VAR_015810
Q
117
L
SOMA_HUMAN
Disease (IGHD1B)
---
A
Q
91
L
17
UniProt
VAR_002710
F
114
S
GHR_HUMAN
Disease (LARS)
---
B
F
96
S
18
UniProt
VAR_015811
S
134
C
SOMA_HUMAN
Disease (IGHD1B)
---
A
S
108
C
19
UniProt
VAR_015812
S
134
R
SOMA_HUMAN
Disease (IGHD1B)
---
A
S
108
R
20
UniProt
VAR_011919
V
136
I
SOMA_HUMAN
Polymorphism
5388
A
V
110
I
21
UniProt
VAR_015813
D
138
G
SOMA_HUMAN
Disease (KWKS)
---
A
D
112
G
22
UniProt
VAR_002711
V
143
A
GHR_HUMAN
Disease (LARS)
---
B
V
125
A
23
UniProt
VAR_018429
P
149
Q
GHR_HUMAN
Disease (LARS)
---
B
P
131
Q
24
UniProt
VAR_002712
V
162
D
GHR_HUMAN
Disease (LARS)
---
B
V
144
D
25
UniProt
VAR_020002
V
162
F
GHR_HUMAN
Polymorphism
6413484
B
V
144
F
26
UniProt
VAR_018430
V
162
I
GHR_HUMAN
Unclassified
6413484
B
V
144
I
27
UniProt
VAR_002713
D
170
H
GHR_HUMAN
Disease (LARS)
---
B
D
152
H
28
UniProt
VAR_018431
I
171
T
GHR_HUMAN
Disease (LARS)
---
B
I
153
T
29
UniProt
VAR_018432
Q
172
P
GHR_HUMAN
Disease (LARS)
---
B
Q
154
P
30
UniProt
VAR_018433
V
173
G
GHR_HUMAN
Disease (LARS)
---
B
V
155
G
31
UniProt
VAR_002714
R
179
C
GHR_HUMAN
Disease (LARS)
121909362
B
R
161
C
32
UniProt
VAR_013937
R
179
H
GHR_HUMAN
Polymorphism
6181
B
R
161
H
33
UniProt
VAR_015814
T
201
A
SOMA_HUMAN
Disease (IGHD1B)
---
A
T
175
A
34
UniProt
VAR_032703
I
205
M
SOMA_HUMAN
Unclassified
---
A
I
179
M
35
UniProt
VAR_015815
R
209
H
SOMA_HUMAN
Disease (IGHD2)
---
A
R
183
H
36
UniProt
VAR_018434
Y
226
C
GHR_HUMAN
Disease (LARS)
---
B
Y
208
C
37
UniProt
VAR_002715
R
229
G
GHR_HUMAN
Disease (LARS)
---
B
R
211
G
38
UniProt
VAR_013938
R
229
H
GHR_HUMAN
Unclassified
6177
B
R
211
H
39
UniProt
VAR_002716
E
242
D
GHR_HUMAN
Unclassified
45588036
B
E
224
D
40
UniProt
VAR_018435
S
244
I
GHR_HUMAN
Disease (LARS)
---
B
S
226
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: SOMATOTROPIN_1 (A:53-86)
2: FN3 (B:133-236)
3: HEMATOPO_REC_L_F1 (B:153-231)
4: SOMATOTROPIN_2 (A:165-182)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOMATOTROPIN_1
PS00266
Somatotropin, prolactin and related hormones signature 1.
SOMA_HUMAN
79-112
1
A:53-86
2
FN3
PS50853
Fibronectin type-III domain profile.
GHR_HUMAN
151-254
1
B:133-236
3
HEMATOPO_REC_L_F1
PS01352
Long hematopoietin receptor, single chain family signature.
GHR_HUMAN
171-249
1
B:153-231
4
SOMATOTROPIN_2
PS00338
Somatotropin, prolactin and related hormones signature 2.
SOMA_HUMAN
191-208
1
A:165-182
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.11 (B:32-71 (gaps))
Exon 1.12 (B:71-129 (gaps))
Exon 1.13 (B:129-188)
Exon 1.14 (B:189-236)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13
4: Boundary 1.13/1.14
5: Boundary 1.14/1.15
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000230882
1a
ENSE00002053008
chr5:
42423879-42424057
179
GHR_HUMAN
-
0
0
-
-
1.5b
ENST00000230882
5b
ENSE00002147016
chr5:
42565966-42566046
81
GHR_HUMAN
1-24
24
0
-
-
1.7
ENST00000230882
7
ENSE00001279449
chr5:
42629140-42629205
66
GHR_HUMAN
24-46
23
0
-
-
1.11
ENST00000230882
11
ENSE00001149027
chr5:
42688992-42689121
130
GHR_HUMAN
46-89
44
1
B:32-71 (gaps)
40
1.12
ENST00000230882
12
ENSE00001008674
chr5:
42695019-42695191
173
GHR_HUMAN
89-147
59
1
B:71-129 (gaps)
59
1.13
ENST00000230882
13
ENSE00001008670
chr5:
42699926-42700104
179
GHR_HUMAN
147-206
60
1
B:129-188
60
1.14
ENST00000230882
14
ENSE00001008673
chr5:
42711309-42711474
166
GHR_HUMAN
207-262
56
1
B:189-236
48
1.15
ENST00000230882
15
ENSE00001083812
chr5:
42713531-42713621
91
GHR_HUMAN
262-292
31
0
-
-
1.17a
ENST00000230882
17a
ENSE00001083813
chr5:
42718154-42718223
70
GHR_HUMAN
292-315
24
0
-
-
1.18d
ENST00000230882
18d
ENSE00001916863
chr5:
42718555-42721979
3425
GHR_HUMAN
316-638
323
0
-
-
[
close EXON info
]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1axia_ (A:)
2a: SCOP_d1axib1 (B:32-130)
2b: SCOP_d1axib2 (B:131-236)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Long-chain cytokines
(46)
Protein domain
:
Growth hormone, somatotropin
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1axia_
A:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Growth hormone receptor
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1axib1
B:32-130
2b
d1axib2
B:131-236
[
close SCOP info
]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1axiA00 (A:3-191)
2a: CATH_1axiB02 (B:132-232)
2b: CATH_1axiB01 (B:32-131)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1axiA00
A:3-191
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1axiB02
B:132-232
2b
1axiB01
B:32-131
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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