PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1AWB
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (93 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN MYO-INOSITOL MONOPHOSPHATASE IN COMPLEX WITH D-INOSITOL-1-PHOSPHATE AND CALCIUM
Authors
:
J. -M. Rondeau, P. D. Pelton, P. Vincendon, A. J. Ganzhorn
Date
:
01 Oct 97 (Deposition) - 14 Jan 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Myo-Inositol, Phosphatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Ganzhorn, J. -M. Rondeau
Structure Of An Enzyme-Substrate Complex And The Catalytic Mechanism Of Human Brain Myo-Inositol Monophosphatase
Protein Eng. V. 10 61 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: D-MYO-INOSITOL-1-PHOSPHATE (IPDa)
3b: D-MYO-INOSITOL-1-PHOSPHATE (IPDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
IPD
2
Ligand/Ion
D-MYO-INOSITOL-1-PHOSPHATE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: CA1 (UNKNOWN)
12: CA2 (UNKNOWN)
13: CA3 (UNKNOWN)
14: CA4 (UNKNOWN)
15: CA5 (UNKNOWN)
16: CA6 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:70 , ASP A:90 , ILE A:92 , IPD A:281 , HOH A:321 , HOH A:341
BINDING SITE FOR RESIDUE CA A 1
02
AC2
SOFTWARE
ASP A:90 , ASP A:93 , ASP A:220 , IPD A:281 , HOH A:326
BINDING SITE FOR RESIDUE CA A 278
03
AC3
SOFTWARE
GLU A:70 , IPD A:281 , HOH A:291 , HOH A:341 , HOH A:403 , HOH A:416
BINDING SITE FOR RESIDUE CA A 279
04
AC4
SOFTWARE
IPD B:1 , GLU B:70 , ASP B:90 , ILE B:92 , CA B:279 , HOH B:308 , HOH B:321
BINDING SITE FOR RESIDUE CA B 278
05
AC5
SOFTWARE
IPD B:1 , ASP B:90 , ASP B:93 , ASP B:220 , CA B:278
BINDING SITE FOR RESIDUE CA B 279
06
AC6
SOFTWARE
IPD B:1 , GLU B:70 , HOH B:308 , HOH B:375 , HOH B:399
BINDING SITE FOR RESIDUE CA B 280
07
AC7
SOFTWARE
HOH A:292 , HOH A:359 , GLY B:189 , ILE B:190 , ARG B:191
BINDING SITE FOR RESIDUE CL B 281
08
AC8
SOFTWARE
HIS A:188 , ARG A:191 , HOH B:330
BINDING SITE FOR RESIDUE CL A 280
09
AC9
SOFTWARE
GLU B:70 , ASP B:90 , ILE B:92 , ASP B:93 , GLY B:94 , THR B:95 , GLU B:162 , GLY B:194 , THR B:195 , ALA B:196 , GLU B:213 , ILE B:216 , ASP B:220 , CA B:278 , CA B:279 , CA B:280 , HOH B:288 , HOH B:308 , HOH B:324 , HOH B:371
BINDING SITE FOR RESIDUE IPD B 1
10
BC1
SOFTWARE
CA A:1 , GLU A:70 , ASP A:90 , ILE A:92 , ASP A:93 , GLY A:94 , THR A:95 , GLU A:162 , GLY A:194 , THR A:195 , ALA A:196 , GLU A:213 , ILE A:216 , ASP A:220 , CA A:278 , CA A:279 , HOH A:310 , HOH A:330 , HOH A:340 , HOH A:341 , HOH A:401 , HOH A:403
BINDING SITE FOR RESIDUE IPD A 281
11
CA1
UNKNOWN
GLU A:70 , ASP A:90 , ILE A:92
CALCIUM BINDING SITE.
12
CA2
UNKNOWN
ASP A:90 , ASP A:93 , ASP A:220
CALCIUM BINDING SITE.
13
CA3
UNKNOWN
GLU A:70
CALCIUM BINDING SITE.
14
CA4
UNKNOWN
GLU B:70 , ASP B:90 , ILE B:92
CALCIUM BINDING SITE.
15
CA5
UNKNOWN
ASP B:90 , ASP B:93 , ASP B:220
CALCIUM BINDING SITE.
16
CA6
UNKNOWN
GLU B:70
CALCIUM BINDING SITE.
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049600 (I109V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049600
I
109
V
IMPA1_HUMAN
Polymorphism
204781
A/B
I
109
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IMP_1 (A:87-100,B:87-100)
2: IMP_2 (A:219-233,B:219-233)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMP_1
PS00629
Inositol monophosphatase family signature 1.
IMPA1_HUMAN
87-100
2
A:87-100
B:87-100
2
IMP_2
PS00630
Inositol monophosphatase family signature 2.
IMPA1_HUMAN
219-233
2
A:219-233
B:219-233
[
close PROSITE info
]
Exons
(8, 16)
Info
All Exons
Exon 1.3a (A:5-21 | B:5-21)
Exon 1.4a (A:22-66 | B:22-66)
Exon 1.5 (A:66-101 | B:66-101)
Exon 1.7a (A:101-116 | B:101-116)
Exon 1.9d (A:117-153 | B:117-153)
Exon 1.10d (A:153-189 | B:153-189)
Exon 1.11b (A:189-240 | B:189-240)
Exon 1.12c (A:240-276 | B:240-276)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.7a
5: Boundary 1.7a/1.9d
6: Boundary 1.9d/1.10d
7: Boundary 1.10d/1.11b
8: Boundary 1.11b/1.12c
9: Boundary 1.12c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000256108
1a
ENSE00002126032
chr8:
82598928-82598487
442
IMPA1_HUMAN
-
0
0
-
-
1.3a
ENST00000256108
3a
ENSE00002163677
chr8:
82593819-82593733
87
IMPA1_HUMAN
1-21
21
2
A:5-21
B:5-21
17
17
1.4a
ENST00000256108
4a
ENSE00000909941
chr8:
82593018-82592885
134
IMPA1_HUMAN
22-66
45
2
A:22-66
B:22-66
45
45
1.5
ENST00000256108
5
ENSE00000909940
chr8:
82591465-82591361
105
IMPA1_HUMAN
66-101
36
2
A:66-101
B:66-101
36
36
1.7a
ENST00000256108
7a
ENSE00000909939
chr8:
82588514-82588469
46
IMPA1_HUMAN
101-116
16
2
A:101-116
B:101-116
16
16
1.9d
ENST00000256108
9d
ENSE00002145495
chr8:
82586184-82586076
109
IMPA1_HUMAN
117-153
37
2
A:117-153
B:117-153
37
37
1.10d
ENST00000256108
10d
ENSE00002149892
chr8:
82583282-82583174
109
IMPA1_HUMAN
153-189
37
2
A:153-189
B:153-189
37
37
1.11b
ENST00000256108
11b
ENSE00001682001
chr8:
82572902-82572751
152
IMPA1_HUMAN
189-240
52
2
A:189-240
B:189-240
52
52
1.12c
ENST00000256108
12c
ENSE00001747149
chr8:
82571701-82570196
1506
IMPA1_HUMAN
240-277
38
2
A:240-276
B:240-276
37
37
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1awba_ (A:)
1b: SCOP_d1awbb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Inositol monophosphatase
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1awba_
A:
1b
d1awbb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1awbA01 (A:5-146)
1b: CATH_1awbB01 (B:5-146)
2a: CATH_1awbB02 (B:147-276)
2b: CATH_1awbA02 (A:147-275)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Human (Homo sapiens)
(25)
1a
1awbA01
A:5-146
1b
1awbB01
B:5-146
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Human (Homo sapiens)
(25)
2a
1awbB02
B:147-276
2b
1awbA02
A:147-275
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (98 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1AWB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help