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1AVZ
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN
Authors
:
S. Arold, P. Franken, C. Dumas
Date
:
23 Sep 97 (Deposition) - 25 Mar 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Complex (Myristylation/Transferase), Gtp-Binding, Hiv-1, Phosphorylation, Nef, Sh3 Domain, Fyn, Tyrosine Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Arold, P. Franken, M. P. Strub, F. Hoh, S. Benichou, R. Benarous, C. Dumas
The Crystal Structure Of Hiv-1 Nef Protein Bound To The Fyn Kinase Sh3 Domain Suggests A Role For This Complex In Altered T Cell Receptor Signaling.
Structure V. 5 1361 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(2, 2)
Info
All Exons
Exon 1.17e (C:85-115)
Exon 1.19g (C:115-141)
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All Exon Boundaries
1: Boundary 1.16b/1.17e
2: Boundary 1.17e/1.19g
3: Boundary 1.19g/1.20d
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.9b
ENST00000368667
9b
ENSE00001414024
chr6:
112115089-112114826
264
FYN_HUMAN
-
0
0
-
-
1.11
ENST00000368667
11
ENSE00001344307
chr6:
112101838-112101769
70
FYN_HUMAN
-
0
0
-
-
1.16b
ENST00000368667
16b
ENSE00002172897
chr6:
112041265-112041008
258
FYN_HUMAN
1-83
83
0
-
-
1.17e
ENST00000368667
17e
ENSE00002146962
chr6:
112035646-112035550
97
FYN_HUMAN
83-115
33
1
C:85-115
31
1.19g
ENST00000368667
19g
ENSE00002180388
chr6:
112029223-112029125
99
FYN_HUMAN
115-148
34
1
C:115-141
27
1.20d
ENST00000368667
20d
ENSE00002152369
chr6:
112025305-112025202
104
FYN_HUMAN
148-183
36
0
-
-
1.21b
ENST00000368667
21b
ENSE00002179099
chr6:
112024237-112024088
150
FYN_HUMAN
183-233
51
0
-
-
1.22b
ENST00000368667
22b
ENSE00002142092
chr6:
112021471-112021307
165
FYN_HUMAN
233-288
56
0
-
-
1.24e
ENST00000368667
24e
ENSE00001880540
chr6:
112017659-112017480
180
FYN_HUMAN
288-348
61
0
-
-
1.25a
ENST00000368667
25a
ENSE00002170268
chr6:
112015907-112015831
77
FYN_HUMAN
348-373
26
0
-
-
1.26
ENST00000368667
26
ENSE00002155280
chr6:
112015731-112015578
154
FYN_HUMAN
374-425
52
0
-
-
1.28a
ENST00000368667
28a
ENSE00002153373
chr6:
111995833-111995702
132
FYN_HUMAN
425-469
45
0
-
-
1.29e
ENST00000368667
29e
ENSE00002112481
chr6:
111983150-111982485
666
FYN_HUMAN
469-537
69
0
-
-
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1avzc_ (C:)
2a: SCOP_d1avza_ (A:)
2b: SCOP_d1avzb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Fyn proto-oncogene tyrosine kinase, SH3 domain
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1avzc_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Regulatory factor Nef
(10)
Superfamily
:
Regulatory factor Nef
(10)
Family
:
Regulatory factor Nef
(8)
Protein domain
:
Regulatory factor Nef
(4)
Human immunodeficiency virus type 1 [TaxId: 11676]
(4)
2a
d1avza_
A:
2b
d1avzb_
B:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1avzB00 (B:71-203)
1b: CATH_1avzA00 (A:74-203)
2a: CATH_1avzC00 (C:85-141)
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)
Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nef Regulatory Factor
(6)
Homologous Superfamily
:
Nef Regulatory Factor
(6)
Human immunodeficiency virus 1. Organism_taxid: 11676. Variant: lai isolate. Cell_line: bl21.
(1)
1a
1avzB00
B:71-203
1b
1avzA00
A:74-203
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human immunodeficiency virus 1. Organism_taxid: 11676. Variant: lai isolate. Cell_line: bl21.
(1)
2a
1avzC00
C:85-141
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (46 KB)
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