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1AVD
Biol. Unit 1
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Asym.Unit (49 KB)
Biol.Unit 1 (84 KB)
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Title
:
THREE-DIMENSIONAL STRUCTURE OF THE TETRAGONAL CRYSTAL FORM OF EGG-WHITE AVIDIN IN ITS FUNCTIONAL COMPLEX WITH BIOTIN AT 2.7 ANGSTROMS RESOLUTION
Authors
:
L. Pugliese, A. Coda, M. Malcovati, M. Bolognesi
Date
:
05 Mar 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Biotin-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Pugliese, A. Coda, M. Malcovati, M. Bolognesi
Three-Dimensional Structure Of The Tetragonal Crystal Form Of Egg-White Avidin In Its Functional Complex With Biotin A 2. 7 A Resolution.
J. Mol. Biol. V. 231 698 1993
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BIOTIN (BTNa)
1b: BIOTIN (BTNb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BTN
4
Ligand/Ion
BIOTIN
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: STA (UNKNOWN)
5: STB (UNKNOWN)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:15 , ASN A:17
BINDING SITE FOR RESIDUE NAG A 600
2
AC2
SOFTWARE
ASN A:12 , LEU A:14 , SER A:16 , TYR A:33 , THR A:35 , VAL A:37 , ALA A:39 , THR A:40 , TRP A:70 , SER A:73 , SER A:75 , THR A:77 , TRP A:97 , TRP A:110 , ASN A:118
BINDING SITE FOR RESIDUE BTN A 400
3
AC3
SOFTWARE
ASN B:12 , SER B:16 , TYR B:33 , THR B:35 , VAL B:37 , THR B:38 , ALA B:39 , THR B:40 , TRP B:70 , PHE B:72 , SER B:73 , SER B:75 , THR B:77 , TRP B:97 , ASN B:118
BINDING SITE FOR RESIDUE BTN B 401
4
STA
UNKNOWN
ASN A:12 , ASP A:13 , LEU A:14 , SER A:16 , TYR A:33 , THR A:35 , ALA A:39 , THR A:40 , TRP A:70 , TRP A:97 , ASN A:118
NULL
5
STB
UNKNOWN
ASN B:12 , ASP B:13 , LEU B:14 , SER B:16 , TYR B:33 , THR B:35 , ALA B:39 , THR B:40 , TRP B:70 , TRP B:97 , ASN B:118
NULL
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_AVID_CHICK_001 (T34T, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AVID_CHICK_001
*
I
58
T
AVID_CHICK
---
---
A/B
T
34
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: AVIDIN_2 (B:2-125)
2: AVIDIN_1 (A:108-122,B:108-122)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AVIDIN_2
PS51326
Avidin-like domain profile.
AVID_CHICK
26-149
2
B:2-125
2
AVIDIN_1
PS00577
Avidin-like domain signature.
AVID_CHICK
132-146
4
A:108-122
B:108-122
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1avda_ (A:)
1b: SCOP_d1avdb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
Avidin/streptavidin
(197)
Family
:
Avidin/streptavidin
(181)
Protein domain
:
Avidin
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
1a
d1avda_
A:
1b
d1avdb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1avdA00 (A:3-125)
1b: CATH_1avdB00 (B:2-125)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.30, no name defined]
(148)
Chicken (Gallus gallus)
(26)
1a
1avdA00
A:3-125
1b
1avdB00
B:2-125
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Pfam Domains
(0, 0)
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all PFAM domains
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