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1AVD
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (84 KB)
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Title
:
THREE-DIMENSIONAL STRUCTURE OF THE TETRAGONAL CRYSTAL FORM OF EGG-WHITE AVIDIN IN ITS FUNCTIONAL COMPLEX WITH BIOTIN AT 2.7 ANGSTROMS RESOLUTION
Authors
:
L. Pugliese, A. Coda, M. Malcovati, M. Bolognesi
Date
:
05 Mar 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Biotin-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Pugliese, A. Coda, M. Malcovati, M. Bolognesi
Three-Dimensional Structure Of The Tetragonal Crystal Form Of Egg-White Avidin In Its Functional Complex With Biotin A 2. 7 A Resolution.
J. Mol. Biol. V. 231 698 1993
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: BIOTIN (BTNa)
1b: BIOTIN (BTNb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTN
2
Ligand/Ion
BIOTIN
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: STA (UNKNOWN)
5: STB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:15 , ASN A:17
BINDING SITE FOR RESIDUE NAG A 600
2
AC2
SOFTWARE
ASN A:12 , LEU A:14 , SER A:16 , TYR A:33 , THR A:35 , VAL A:37 , ALA A:39 , THR A:40 , TRP A:70 , SER A:73 , SER A:75 , THR A:77 , TRP A:97 , TRP A:110 , ASN A:118
BINDING SITE FOR RESIDUE BTN A 400
3
AC3
SOFTWARE
ASN B:12 , SER B:16 , TYR B:33 , THR B:35 , VAL B:37 , THR B:38 , ALA B:39 , THR B:40 , TRP B:70 , PHE B:72 , SER B:73 , SER B:75 , THR B:77 , TRP B:97 , ASN B:118
BINDING SITE FOR RESIDUE BTN B 401
4
STA
UNKNOWN
ASN A:12 , ASP A:13 , LEU A:14 , SER A:16 , TYR A:33 , THR A:35 , ALA A:39 , THR A:40 , TRP A:70 , TRP A:97 , ASN A:118
NULL
5
STB
UNKNOWN
ASN B:12 , ASP B:13 , LEU B:14 , SER B:16 , TYR B:33 , THR B:35 , ALA B:39 , THR B:40 , TRP B:70 , TRP B:97 , ASN B:118
NULL
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_AVID_CHICK_001 (T34T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AVID_CHICK_001
*
I
58
T
AVID_CHICK
---
---
A/B
T
34
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: AVIDIN_2 (B:2-125)
2: AVIDIN_1 (A:108-122,B:108-122)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AVIDIN_2
PS51326
Avidin-like domain profile.
AVID_CHICK
26-149
1
B:2-125
2
AVIDIN_1
PS00577
Avidin-like domain signature.
AVID_CHICK
132-146
2
A:108-122
B:108-122
[
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]
Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:3-3 | B:2-3)
Exon 1.4 (A:4-74 | B:4-74)
Exon 1.5 (A:74-114 | B:74-114)
Exon 1.6a (A:114-125 | B:114-125)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6a
5: Boundary 1.6a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000003855
1
ENSGALE00000024242
Z:8485802-8485882
81
AVID_CHICK
1-27
27
2
A:3-3
B:2-3
1
2
1.4
ENSGALT00000003855
4
ENSGALE00000024240
Z:8501440-8501650
211
AVID_CHICK
28-98
71
2
A:4-74
B:4-74
71
71
1.5
ENSGALT00000003855
5
ENSGALE00000024243
Z:8502076-8502196
121
AVID_CHICK
98-138
41
2
A:74-114
B:74-114
41
41
1.6a
ENSGALT00000003855
6a
ENSGALE00000024241
Z:8502284-8502409
126
AVID_CHICK
138-152
15
2
A:114-125
B:114-125
12
12
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1avda_ (A:)
1b: SCOP_d1avdb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
Avidin/streptavidin
(197)
Family
:
Avidin/streptavidin
(181)
Protein domain
:
Avidin
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
1a
d1avda_
A:
1b
d1avdb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1avdA00 (A:3-125)
1b: CATH_1avdB00 (B:2-125)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.30, no name defined]
(148)
Chicken (Gallus gallus)
(26)
1a
1avdA00
A:3-125
1b
1avdB00
B:2-125
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Pfam Domains
(0, 0)
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