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1ATI
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Authors
:
D. T. Logan, M. -H. Mazauric, D. Kern, D. Moras
Date
:
23 Apr 96 (Deposition) - 07 Jul 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein Biosynthesis, Ligase, Synthetase, Aminoacyl-Trna Synthetase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Logan, M. H. Mazauric, D. Kern, D. Moras
Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus.
Embo J. V. 14 4156 1995
(for further references see the
PDB file header
)
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Hetero Components
(1, 53)
Info
All Hetero Components
1a: (UNKa)
1aa: (UNKaa)
1ab: (UNKab)
1ac: (UNKac)
1ad: (UNKad)
1ae: (UNKae)
1af: (UNKaf)
1ag: (UNKag)
1ah: (UNKah)
1ai: (UNKai)
1aj: (UNKaj)
1ak: (UNKak)
1al: (UNKal)
1am: (UNKam)
1an: (UNKan)
1ao: (UNKao)
1ap: (UNKap)
1aq: (UNKaq)
1ar: (UNKar)
1as: (UNKas)
1at: (UNKat)
1au: (UNKau)
1av: (UNKav)
1aw: (UNKaw)
1ax: (UNKax)
1ay: (UNKay)
1az: (UNKaz)
1b: (UNKb)
1ba: (UNKba)
1c: (UNKc)
1d: (UNKd)
1e: (UNKe)
1f: (UNKf)
1g: (UNKg)
1h: (UNKh)
1i: (UNKi)
1j: (UNKj)
1k: (UNKk)
1l: (UNKl)
1m: (UNKm)
1n: (UNKn)
1o: (UNKo)
1p: (UNKp)
1q: (UNKq)
1r: (UNKr)
1s: (UNKs)
1t: (UNKt)
1u: (UNKu)
1v: (UNKv)
1w: (UNKw)
1x: (UNKx)
1y: (UNKy)
1z: (UNKz)
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No.
Name
Count
Type
Full Name
1
UNK
53
Mod. Amino Acid
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Sites
(1, 1)
Info
All Sites
1: SA1 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
SA1
UNKNOWN
HIS A:79 , GLU A:188 , ARG A:220 , GLU A:222 , PHE A:235 , GLN A:237 , GLU A:239 , GLU A:241 , ASP A:293 , GLU A:304 , ARG A:311 , GLU A:359 , SER A:361 , ARG A:366
THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1atia2 (A:1-394)
1b: SCOP_d1atib2 (B:1-394)
2a: SCOP_d1atia1 (A:395-505)
2b: SCOP_d1atib1 (B:395-505)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Glycyl-tRNA synthetase (GlyRS)
(3)
Thermus thermophilus [TaxId: 274]
(3)
1a
d1atia2
A:1-394
1b
d1atib2
B:1-394
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
Class II aaRS ABD-related
(40)
Family
:
Anticodon-binding domain of Class II aaRS
(33)
Protein domain
:
Glycyl-tRNA synthetase (GlyRS), C-terminal domain
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d1atia1
A:395-505
2b
d1atib1
B:395-505
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1atiB01 (B:1-374)
1b: CATH_1atiA01 (A:1-374)
2a: CATH_1atiB02 (B:393-504)
2b: CATH_1atiA02 (A:393-505)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. Thermusthermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(2)
1a
1atiB01
B:1-374
1b
1atiA01
A:1-374
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. Thermusthermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
2a
1atiB02
B:393-504
2b
1atiA02
A:393-505
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Pfam Domains
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