PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1AQN
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (45 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SUBTILISIN MUTANT 8324
Authors
:
M. Whitlow, A. J. Howard, J. F. Wood
Date
:
31 Jul 97 (Deposition) - 14 Jan 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Serine Proteinase, Serine Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Muralikrishna, E. Wickstrom
Large Increases In General Stabilityfor Subtilisin Bpn' Through Incremental Changes In The Free Energy Of Unfolding
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: 169 (UNKNOWN)
02: 206 (UNKNOWN)
03: 217 (UNKNOWN)
04: 218 (UNKNOWN)
05: AC1 (SOFTWARE)
06: AC2 (SOFTWARE)
07: AC3 (SOFTWARE)
08: AC4 (SOFTWARE)
09: AC5 (SOFTWARE)
10: AC6 (SOFTWARE)
11: C22 (UNKNOWN)
12: C87 (UNKNOWN)
13: CA1 (UNKNOWN)
14: CA2 (UNKNOWN)
15: F50 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
169
UNKNOWN
ALA A:169
MUTATION FROM GLY TO ALA AT RESIDUE 169.
02
206
UNKNOWN
CYS A:206
MUTATION FROM GLN TO CYS AT RESIDUE 206. SOME UNKNOWN COMPOUND IS BOUND TO THE SG.
03
217
UNKNOWN
LYS A:217
MUTATION FROM TYR TO LYS AT RESIDUE 217.
04
218
UNKNOWN
SER A:218
MUTATION FROM ASN TO SER AT RESIDUE 218.
05
AC1
SOFTWARE
GLN A:2 , ASP A:41 , LEU A:75 , ASN A:77 , ILE A:79 , VAL A:81
BINDING SITE FOR RESIDUE CA A 295
06
AC2
SOFTWARE
GLU A:195 , ASP A:197 , HOH A:296 , HOH A:340 , HOH A:372 , HOH A:483
BINDING SITE FOR RESIDUE CA A 297
07
AC3
SOFTWARE
CYS A:206 , UNX A:278
BINDING SITE FOR RESIDUE UNX A 277
08
AC4
SOFTWARE
CYS A:206 , GLY A:215 , UNX A:277
BINDING SITE FOR RESIDUE UNX A 278
09
AC5
SOFTWARE
PHE A:58 , ARG A:186
BINDING SITE FOR RESIDUE IPA A 290
10
AC6
SOFTWARE
SER A:145 , PHE A:189
BINDING SITE FOR RESIDUE IPA A 291
11
C22
UNKNOWN
CYS A:22
MUTATION FROM THR TO CYS AT RESIDUE 22. CYS 22 FORMS A DISULFIDE BOND WITH CYS 87.
12
C87
UNKNOWN
CYS A:87
MUTATION FROM SER TO CYS AT RESIDUE 87. CYS 87 FORMS A DISULFIDE BOND WITH CYS 22.
13
CA1
UNKNOWN
CA A:295
HIGH AFFINITY CALCIUM BINDING SITE.
14
CA2
UNKNOWN
CA A:297
LOW AFFINITY CALCIUM BINDING SITE.
15
F50
UNKNOWN
PHE A:50
MUTATION FROM MET TO PHE AT RESIDUE 50.
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SUBT_BACAM_001 (Y21F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SUBT_BACAM_001
*
Y
128
F
SUBT_BACAM
---
---
A
Y
21
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SUBTILASE_ASP (A:28-39)
2: SUBTILASE_HIS (A:64-74)
3: SUBTILASE_SER (A:219-229)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUBTILASE_ASP
PS00136
Serine proteases, subtilase family, aspartic acid active site.
SUBT_BACAM
135-146
1
A:28-39
2
SUBTILASE_HIS
PS00137
Serine proteases, subtilase family, histidine active site.
SUBT_BACAM
171-181
1
A:64-74
3
SUBTILASE_SER
PS00138
Serine proteases, subtilase family, serine active site.
SUBT_BACAM
326-336
1
A:219-229
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1aqna_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Subtilisin-like
(227)
Superfamily
:
Subtilisin-like
(227)
Family
:
Subtilases
(190)
Protein domain
:
Subtilisin
(91)
Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
(54)
1a
d1aqna_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1aqnA00 (A:1-275)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.200, no name defined]
(198)
Bacillus amyloliquefaciens. Organism_taxid: 1390. Strain: gx8324.
(2)
1a
1aqnA00
A:1-275
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (49 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1AQN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help