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1APJ
Asym. Unit
Info
Asym.Unit (377 KB)
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Models
(21 )
Title
:
NMR STUDY OF THE TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN-LIKE DOMAIN (TB MODULE/8-CYS DOMAIN), NMR, 21 STRUCTURES
Authors
:
X. Yuan, A. K. Downing, V. Knott, P. A. Handford
Date
:
22 Jul 97 (Deposition) - 28 Jan 98 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (21 x)
Keywords
:
Fibrillin Fragment, Microfibril, Tb Module, Marfan Syndrome, Connective Tissue, Novel Fold, Extracellular Matrix
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Yuan, A. K. Downing, V. Knott, P. A. Handford
Solution Structure Of The Transforming Growth Factor Beta-Binding Protein-Like Module, A Domain Associated With Matrix Fibrils.
Embo J. V. 16 6659 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_023899 (C2085R, chain A, )
2: VAR_002333 (C2099W, chain A, )
3: VAR_018028 (T2101M, chain A, )
4: VAR_018029 (C2111R, chain A, )
5: VAR_002334 (C2111Y, chain A, )
6: VAR_055732 (Y2113F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023899
C
2085
R
FBN1_HUMAN
Disease (MFS)
---
A
C
2085
R
2
UniProt
VAR_002333
C
2099
W
FBN1_HUMAN
Disease (MFS)
---
A
C
2099
W
3
UniProt
VAR_018028
T
2101
M
FBN1_HUMAN
Polymorphism
200816828
A
T
2101
M
4
UniProt
VAR_018029
C
2111
R
FBN1_HUMAN
Disease (MFS)
363815
A
C
2111
R
5
UniProt
VAR_002334
C
2111
Y
FBN1_HUMAN
Disease (MFS)
---
A
C
2111
Y
6
UniProt
VAR_055732
Y
2113
F
FBN1_HUMAN
Polymorphism
363816
A
Y
2113
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TB (-|-|-|-|-|-|-|A:2059-2111|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TB
PS51364
TGF-beta binding (TB) domain profile.
FBN1_HUMAN
184-227
334-389
659-711
851-890
956-1008
1532-1589
1693-1748
2059-2111
2337-2390
1
-
-
-
-
-
-
-
A:2059-2111
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.50 (A:1-2055 (gaps))
Exon 1.51 (A:2055-2105)
Exon 1.52 (A:2105-2125)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.49/1.50
2: Boundary 1.50/1.51
3: Boundary 1.51/1.52
4: Boundary 1.52/1.53
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000316623
1
ENSE00001525471
chr15:
48937918-48937772
147
FBN1_HUMAN
-
0
0
-
-
1.2
ENST00000316623
2
ENSE00002176401
chr15:
48937147-48936803
345
FBN1_HUMAN
1-55
55
0
-
-
1.3
ENST00000316623
3
ENSE00001761744
chr15:
48905289-48905207
83
FBN1_HUMAN
55-83
29
0
-
-
1.4
ENST00000316623
4
ENSE00001729100
chr15:
48903023-48902925
99
FBN1_HUMAN
83-116
34
0
-
-
1.5
ENST00000316623
5
ENSE00001737946
chr15:
48892431-48892336
96
FBN1_HUMAN
116-148
33
0
-
-
1.6
ENST00000316623
6
ENSE00001783191
chr15:
48888575-48888480
96
FBN1_HUMAN
148-180
33
0
-
-
1.7
ENST00000316623
7
ENSE00001764592
chr15:
48830005-48829808
198
FBN1_HUMAN
180-246
67
0
-
-
1.8
ENST00000316623
8
ENSE00001793339
chr15:
48826402-48826277
126
FBN1_HUMAN
246-288
43
0
-
-
1.9
ENST00000316623
9
ENSE00001771562
chr15:
48818452-48818327
126
FBN1_HUMAN
288-330
43
0
-
-
1.10
ENST00000316623
10
ENSE00001744589
chr15:
48813014-48812856
159
FBN1_HUMAN
330-383
54
0
-
-
1.11
ENST00000316623
11
ENSE00001699841
chr15:
48808559-48808380
180
FBN1_HUMAN
383-443
61
0
-
-
1.12
ENST00000316623
12
ENSE00001599991
chr15:
48807724-48807584
141
FBN1_HUMAN
443-490
48
0
-
-
1.13
ENST00000316623
13
ENSE00001788059
chr15:
48805865-48805746
120
FBN1_HUMAN
490-530
41
0
-
-
1.14
ENST00000316623
14
ENSE00001675795
chr15:
48802366-48802241
126
FBN1_HUMAN
530-572
43
0
-
-
1.15
ENST00000316623
15
ENSE00001666782
chr15:
48800901-48800779
123
FBN1_HUMAN
572-613
42
0
-
-
1.16
ENST00000316623
16
ENSE00001721875
chr15:
48797344-48797222
123
FBN1_HUMAN
613-654
42
0
-
-
1.17
ENST00000316623
17
ENSE00001715942
chr15:
48796136-48795984
153
FBN1_HUMAN
654-705
52
0
-
-
1.18
ENST00000316623
18
ENSE00001640683
chr15:
48791235-48791182
54
FBN1_HUMAN
705-723
19
0
-
-
1.19
ENST00000316623
19
ENSE00001612341
chr15:
48789588-48789463
126
FBN1_HUMAN
723-765
43
0
-
-
1.20
ENST00000316623
20
ENSE00001630897
chr15:
48788422-48788297
126
FBN1_HUMAN
765-807
43
0
-
-
1.21
ENST00000316623
21
ENSE00001772761
chr15:
48787785-48787666
120
FBN1_HUMAN
807-847
41
0
-
-
1.22
ENST00000316623
22
ENSE00001661869
chr15:
48787457-48787320
138
FBN1_HUMAN
847-893
47
0
-
-
1.23
ENST00000316623
23
ENSE00001788284
chr15:
48786451-48786401
51
FBN1_HUMAN
893-910
18
0
-
-
1.24
ENST00000316623
24
ENSE00001769793
chr15:
48784783-48784658
126
FBN1_HUMAN
910-952
43
0
-
-
1.25
ENST00000316623
25
ENSE00001717687
chr15:
48782275-48782048
228
FBN1_HUMAN
952-1028
77
0
-
-
1.26
ENST00000316623
26
ENSE00001613423
chr15:
48780690-48780565
126
FBN1_HUMAN
1028-1070
43
0
-
-
1.27
ENST00000316623
27
ENSE00001762721
chr15:
48780438-48780310
129
FBN1_HUMAN
1070-1113
44
0
-
-
1.28
ENST00000316623
28
ENSE00001641154
chr15:
48779634-48779509
126
FBN1_HUMAN
1113-1155
43
0
-
-
1.29
ENST00000316623
29
ENSE00001800492
chr15:
48779397-48779272
126
FBN1_HUMAN
1155-1197
43
0
-
-
1.30
ENST00000316623
30
ENSE00001620699
chr15:
48777693-48777571
123
FBN1_HUMAN
1197-1238
42
0
-
-
1.31
ENST00000316623
31
ENSE00001613453
chr15:
48776140-48776015
126
FBN1_HUMAN
1238-1280
43
0
-
-
1.32
ENST00000316623
32
ENSE00001753582
chr15:
48773977-48773852
126
FBN1_HUMAN
1280-1322
43
0
-
-
1.33
ENST00000316623
33
ENSE00001628258
chr15:
48766847-48766725
123
FBN1_HUMAN
1322-1363
42
0
-
-
1.34
ENST00000316623
34
ENSE00001770461
chr15:
48766574-48766452
123
FBN1_HUMAN
1363-1404
42
0
-
-
1.35
ENST00000316623
35
ENSE00001613724
chr15:
48764873-48764748
126
FBN1_HUMAN
1404-1446
43
0
-
-
1.36
ENST00000316623
36
ENSE00000884505
chr15:
48762953-48762831
123
FBN1_HUMAN
1446-1487
42
0
-
-
1.37
ENST00000316623
37
ENSE00000884504
chr15:
48760731-48760609
123
FBN1_HUMAN
1487-1528
42
0
-
-
1.38
ENST00000316623
38
ENSE00000686984
chr15:
48760299-48760135
165
FBN1_HUMAN
1528-1583
56
0
-
-
1.39
ENST00000316623
39
ENSE00000686980
chr15:
48758055-48757987
69
FBN1_HUMAN
1583-1606
24
0
-
-
1.40
ENST00000316623
40
ENSE00000686976
chr15:
48757890-48757765
126
FBN1_HUMAN
1606-1648
43
0
-
-
1.41
ENST00000316623
41
ENSE00000884503
chr15:
48756218-48756096
123
FBN1_HUMAN
1648-1689
42
0
-
-
1.42
ENST00000316623
42
ENSE00000686967
chr15:
48755437-48755279
159
FBN1_HUMAN
1689-1742
54
0
-
-
1.43
ENST00000316623
43
ENSE00001175019
chr15:
48752514-48752443
72
FBN1_HUMAN
1742-1766
25
0
-
-
1.44
ENST00000316623
44
ENSE00000884501
chr15:
48748959-48748834
126
FBN1_HUMAN
1766-1808
43
0
-
-
1.45
ENST00000316623
45
ENSE00000884500
chr15:
48744881-48744759
123
FBN1_HUMAN
1808-1849
42
0
-
-
1.46
ENST00000316623
46
ENSE00001181714
chr15:
48741090-48740965
126
FBN1_HUMAN
1849-1891
43
0
-
-
1.47
ENST00000316623
47
ENSE00001175887
chr15:
48739019-48738903
117
FBN1_HUMAN
1891-1930
40
0
-
-
1.48
ENST00000316623
48
ENSE00000884497
chr15:
48737701-48737573
129
FBN1_HUMAN
1930-1973
44
0
-
-
1.49
ENST00000316623
49
ENSE00000884496
chr15:
48736857-48736738
120
FBN1_HUMAN
1973-2013
41
0
-
-
1.50
ENST00000316623
50
ENSE00000884495
chr15:
48734043-48733918
126
FBN1_HUMAN
2013-2055
43
1
A:1-2055 (gaps)
8
1.51
ENST00000316623
51
ENSE00000884494
chr15:
48730114-48729965
150
FBN1_HUMAN
2055-2105
51
1
A:2055-2105
51
1.52
ENST00000316623
52
ENSE00000884493
chr15:
48729584-48729519
66
FBN1_HUMAN
2105-2127
23
1
A:2105-2125
21
1.53
ENST00000316623
53
ENSE00000884492
chr15:
48729274-48729158
117
FBN1_HUMAN
2127-2166
40
0
-
-
1.54
ENST00000316623
54
ENSE00001721904
chr15:
48726910-48726791
120
FBN1_HUMAN
2166-2206
41
0
-
-
1.55
ENST00000316623
55
ENSE00001759584
chr15:
48725185-48725063
123
FBN1_HUMAN
2206-2247
42
0
-
-
1.56
ENST00000316623
56
ENSE00000884489
chr15:
48722999-48722868
132
FBN1_HUMAN
2247-2291
45
0
-
-
1.57
ENST00000316623
57
ENSE00000884488
chr15:
48720668-48720543
126
FBN1_HUMAN
2291-2333
43
0
-
-
1.59
ENST00000316623
59
ENSE00001682471
chr15:
48719970-48719764
207
FBN1_HUMAN
2333-2402
70
0
-
-
1.60
ENST00000316623
60
ENSE00001657678
chr15:
48718061-48717936
126
FBN1_HUMAN
2402-2444
43
0
-
-
1.61
ENST00000316623
61
ENSE00001705569
chr15:
48717688-48717566
123
FBN1_HUMAN
2444-2485
42
0
-
-
1.62
ENST00000316623
62
ENSE00001770578
chr15:
48714265-48714149
117
FBN1_HUMAN
2485-2524
40
0
-
-
1.63
ENST00000316623
63
ENSE00001771268
chr15:
48713883-48713755
129
FBN1_HUMAN
2524-2567
44
0
-
-
1.64
ENST00000316623
64
ENSE00001767848
chr15:
48713003-48712884
120
FBN1_HUMAN
2567-2607
41
0
-
-
1.65
ENST00000316623
65
ENSE00001743300
chr15:
48707964-48707733
232
FBN1_HUMAN
2607-2684
78
0
-
-
1.66
ENST00000316623
66
ENSE00001804196
chr15:
48704940-48704766
175
FBN1_HUMAN
2684-2742
59
0
-
-
1.67
ENST00000316623
67
ENSE00001662441
chr15:
48703576-48700505
3072
FBN1_HUMAN
2743-2871
129
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1apja_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
TB module/8-cys domain
(6)
Superfamily
:
TB module/8-cys domain
(6)
Family
:
TB module/8-cys domain
(6)
Protein domain
:
Fibrillin
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1apja_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1apjA00 (A:1-2125)
View:
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(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Extracellular Matrix Fibrillin
(2)
Homologous Superfamily
:
Extracellular Matrix Fibrillin
(2)
Human (homo sapiens)
(1)
1a
1apjA00
A:1-2125
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
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Atom Selection
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Protein
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Chain A
Asymmetric Unit 1
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