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1AN9
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
D-AMINO ACID OXIDASE COMPLEX WITH O-AMINOBENZOATE
Authors
:
R. Miura, C. Setoyama, Y. Nishina, K. Shiga, H. Mizutani, I. Miyahara, K. Hirotsu
Date
:
28 Jun 97 (Deposition) - 12 Nov 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fad, Oxidase, D-Amino Acid, Oxidoreductase, Flavoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Miura, C. Setoyama, Y. Nishina, K. Shiga, H. Mizutani, I. Miyahara, K. Hirotsu
Structural And Mechanistic Studies On D-Amino Acid Oxidase X Substrate Complex: Implications Of The Crystal Structure Of Enzyme X Substrate Analog Complex.
J. Biochem. (Tokyo) V. 122 825 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 2-AMINOBENZOIC ACID (BE2a)
1b: 2-AMINOBENZOIC ACID (BE2b)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BE2
2
Ligand/Ion
2-AMINOBENZOIC ACID
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:6 , GLY A:7 , ALA A:8 , GLY A:9 , VAL A:10 , ILE A:11 , ALA A:36 , ASP A:37 , ARG A:38 , THR A:44 , THR A:45 , ALA A:48 , ALA A:49 , GLY A:50 , LEU A:51 , ARG A:162 , LYS A:163 , VAL A:164 , CYS A:181 , THR A:182 , GLY A:183 , TRP A:185 , LEU A:189 , ILE A:202 , GLY A:281 , ARG A:283 , GLY A:312 , GLY A:313 , TYR A:314 , GLY A:315 , LEU A:316 , THR A:317 , BE2 A:352 , HOH A:801 , HOH A:810 , HOH A:813 , HOH A:850
BINDING SITE FOR RESIDUE FAD A 351
2
AC2
SOFTWARE
LEU A:51 , ILE A:215 , TYR A:224 , TYR A:228 , ARG A:283 , GLY A:313 , FAD A:351
BINDING SITE FOR RESIDUE BE2 A 352
3
AC3
SOFTWARE
GLY B:7 , ALA B:8 , GLY B:9 , VAL B:10 , ILE B:11 , ALA B:36 , ASP B:37 , ARG B:38 , THR B:43 , THR B:44 , THR B:45 , ALA B:48 , ALA B:49 , GLY B:50 , LEU B:51 , ARG B:162 , LYS B:163 , VAL B:164 , CYS B:181 , THR B:182 , GLY B:183 , TRP B:185 , ILE B:202 , GLY B:281 , ARG B:283 , GLY B:312 , GLY B:313 , TYR B:314 , GLY B:315 , LEU B:316 , THR B:317 , BE2 B:352 , HOH B:802 , HOH B:807 , HOH B:816 , HOH B:823 , HOH B:833
BINDING SITE FOR RESIDUE FAD B 351
4
AC4
SOFTWARE
TYR B:224 , TYR B:228 , ARG B:283 , GLY B:313 , FAD B:351
BINDING SITE FOR RESIDUE BE2 B 352
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DAO (A:305-323,B:305-323)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAO
PS00677
D-amino acid oxidases signature.
OXDA_PIG
305-323
2
A:305-323
B:305-323
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1an9a2 (A:195-287)
1b: SCOP_d1an9b2 (B:195-287)
2a: SCOP_d1an9a1 (A:1-194,A:288-340)
2b: SCOP_d1an9b1 (B:1-194,B:288-340)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
D-aminoacid oxidase
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
1a
d1an9a2
A:195-287
1b
d1an9b2
B:195-287
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-binding domain
(33)
Superfamily
:
Nucleotide-binding domain
(33)
Family
:
D-aminoacid oxidase, N-terminal domain
(10)
Protein domain
:
D-aminoacid oxidase, N-terminal domain
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
2a
d1an9a1
A:1-194,A:288-340
2b
d1an9b1
B:1-194,B:288-340
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1an9A02 (A:89-139,A:196-285)
1b: CATH_1an9B02 (B:89-139,B:196-285)
2a: CATH_1an9A01 (A:1-88,A:140-195,A:286-339)
2b: CATH_1an9B01 (B:1-88,B:140-195,B:286-339)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Pig (Sus scrofa)
(6)
1a
1an9A02
A:89-139,A:196-285
1b
1an9B02
B:89-139,B:196-285
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pig (Sus scrofa)
(21)
2a
1an9A01
A:1-88,A:140-195,A:286-339
2b
1an9B01
B:1-88,B:140-195,B:286-339
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (121 KB)
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