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1AN0
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CDC42HS-GDP COMPLEX
Authors
:
P. Kongsaeree, R. Cerione, J. Clardy
Date
:
26 Jun 97 (Deposition) - 13 Jan 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Gtpase, G-Protein, Lipoprotein, Prenylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kongsaeree, R. A. Cerione, J. C. Clardy
The Structure Determination Of Cdc42Hs And Gdp Complex
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:17 , GDP A:200
BINDING SITE FOR RESIDUE MG A 201
2
AC2
SOFTWARE
THR B:17 , THR B:35 , GDP B:700
BINDING SITE FOR RESIDUE MG B 701
3
AC3
SOFTWARE
GLY A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , VAL A:33 , GLN A:116 , ASP A:118 , SER A:158 , ALA A:159 , LEU A:160 , MG A:201 , HOH A:826
BINDING SITE FOR RESIDUE GDP A 200
4
AC4
SOFTWARE
ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , VAL B:33 , GLN B:116 , ASP B:118 , SER B:158 , ALA B:159 , LEU B:160 , MG B:701 , HOH B:854
BINDING SITE FOR RESIDUE GDP B 700
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076337 (Y64C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076337
Y
64
C
CDC42_HUMAN
Disease (TKS)
864309721
A/B
Y
64
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176,B:1-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
CDC42_HUMAN
1-176
2
A:1-176
B:1-176
[
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Exons
(5, 10)
Info
All Exons
Exon 1.4 (A:1-35 | B:1-35)
Exon 1.6 (A:36-60 | B:36-60)
Exon 1.7 (A:60-96 | B:60-96)
Exon 1.8b (A:97-162 | B:97-162)
Exon 1.10a (A:163-189 | B:163-189 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4
2: Boundary 1.4/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
5: Boundary 1.8b/1.10a
6: Boundary 1.10a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000400259
1a
ENSE00001132068
chr1:
22379120-22379235
116
CDC42_HUMAN
-
0
0
-
-
1.4
ENST00000400259
4
ENSE00002144782
chr1:
22404922-22405076
155
CDC42_HUMAN
1-35
35
2
A:1-35
B:1-35
35
35
1.6
ENST00000400259
6
ENSE00000388403
chr1:
22408215-22408287
73
CDC42_HUMAN
36-60
25
2
A:36-60
B:36-60
25
25
1.7
ENST00000400259
7
ENSE00000759640
chr1:
22412932-22413041
110
CDC42_HUMAN
60-96
37
2
A:60-96
B:60-96
37
37
1.8b
ENST00000400259
8b
ENSE00000388405
chr1:
22413162-22413359
198
CDC42_HUMAN
97-162
66
2
A:97-162
B:97-162
66
66
1.10a
ENST00000400259
10a
ENSE00001357650
chr1:
22417921-22419416
1496
CDC42_HUMAN
163-191
29
2
A:163-189
B:163-189 (gaps)
27
27
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1an0a_ (A:)
1b: SCOP_d1an0b_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
CDC42
(28)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1an0a_
A:
1b
d1an0b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1an0A00 (A:2-189)
1b: CATH_1an0B00 (B:2-189)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1an0A00
A:2-189
1b
1an0B00
B:2-189
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (63 KB)
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