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1AMU
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
PHENYLALANINE ACTIVATING DOMAIN OF GRAMICIDIN SYNTHETASE 1 IN A COMPLEX WITH AMP AND PHENYLALANINE
Authors
:
E. Conti, T. Stachelhaus, M. A. Marahiel, P. Brick
Date
:
18 Jun 97 (Deposition) - 01 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Peptide Synthetase, Grsa, Adenylate Forming
(Keyword Search:
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Reference
:
E. Conti, T. Stachelhaus, M. A. Marahiel, P. Brick
Structural Basis For The Activation Of Phenylalanine In The Non-Ribosomal Biosynthesis Of Gramicidin S.
Embo J. V. 16 4174 1997
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: PHENYLALANINE (PHEa)
3b: PHENYLALANINE (PHEb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
PHE
1
Mod. Amino Acid
PHENYLALANINE
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:325 , GLU A:327 , AMP A:567 , HOH A:789
BINDING SITE FOR RESIDUE MG A 564
2
AC2
SOFTWARE
ARG A:389 , PRO A:390 , GLU A:391 , LEU A:392
BINDING SITE FOR RESIDUE SO4 A 565
3
AC5
SOFTWARE
PHE A:234 , ASP A:235 , TRP A:239 , ALA A:301 , GLY A:302 , ALA A:322 , GLY A:324 , THR A:326 , ILE A:330 , LYS A:517 , AMP A:567
BINDING SITE FOR RESIDUE PHE A 566
4
AC7
SOFTWARE
THR A:190 , PHE A:234 , GLY A:302 , SER A:303 , ALA A:304 , ASN A:321 , ALA A:322 , TYR A:323 , THR A:326 , ASP A:413 , TYR A:425 , LYS A:517 , MG A:564 , PHE A:566 , HOH A:573 , HOH A:742
BINDING SITE FOR RESIDUE AMP A 567
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMP_BINDING (A:187-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMP_BINDING
PS00455
Putative AMP-binding domain signature.
GRSA_ANEMI
187-198
1
A:187-198
-
GRSA_BREBE
187-198
1
A:187-198
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1amua_ (A:)
1b: SCOP_d1amub_ (B:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
Acetyl-CoA synthetase-like
(38)
Protein domain
:
Phenylalanine activating domain of gramicidin synthetase 1
(1)
Bacillus brevis [TaxId: 1393]
(1)
1a
d1amua_
A:
1b
d1amub_
B:
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1amuA04 (A:435-530)
1b: CATH_1amuB04 (B:435-528)
2a: CATH_1amuB01 (B:36-205)
2b: CATH_1amuA01 (A:36-205)
2c: CATH_1amuA02 (A:206-345)
2d: CATH_1amuB02 (B:206-345)
3a: CATH_1amuA03 (A:346-426)
3b: CATH_1amuB03 (B:346-426)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.30, no name defined]
(30)
Brevibacillus brevis. Organism_taxid: 1393.
(1)
1a
1amuA04
A:435-530
1b
1amuB04
B:435-528
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.980, no name defined]
(13)
Brevibacillus brevis. Organism_taxid: 1393.
(1)
2a
1amuB01
B:36-205
2b
1amuA01
A:36-205
2c
1amuA02
A:206-345
2d
1amuB02
B:206-345
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Luciferase; domain 3
(13)
Homologous Superfamily
:
Luciferase; Domain 3
(13)
Brevibacillus brevis. Organism_taxid: 1393.
(1)
3a
1amuA03
A:346-426
3b
1amuB03
B:346-426
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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