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1AMJ
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (127 KB)
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(1)
Title
:
STERIC AND CONFORMATIONAL FEATURES OF THE ACONITASE MECHANISM
Authors
:
C. D. Stout
Date
:
11 Nov 94 (Deposition) - 26 Jan 95 (Release) - 24 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lyase(Carbon-Oxygen)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Lauble, C. D. Stout
Steric And Conformational Features Of The Aconitase Mechanism.
Proteins V. 22 1 1995
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: HYDROXIDE ION (OHa)
2a: IRON/SULFUR CLUSTER (SF4a)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
OH
1
Ligand/Ion
HYDROXIDE ION
2
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: ACT (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:165 , HIS A:167 , SF4 A:999 , HOH A:1336 , HOH A:1352
BINDING SITE FOR RESIDUE OH A 998
2
AC2
SOFTWARE
GLN A:72 , THR A:75 , ARG A:580 , SER A:642 , SER A:643 , ARG A:644 , HOH A:1266 , HOH A:1336
BINDING SITE FOR RESIDUE SO4 A 997
3
AC3
SOFTWARE
ILE A:145 , HIS A:167 , CYS A:358 , CYS A:421 , CYS A:424 , ASN A:446 , OH A:998
BINDING SITE FOR RESIDUE SF4 A 999
4
ACT
UNKNOWN
GLN A:72 , ASP A:100 , HIS A:101 , HIS A:147 , ASP A:165 , SER A:166 , HIS A:167 , ASN A:170 , ASN A:258 , GLU A:262 , ASN A:446 , ARG A:447 , ARG A:452 , ARG A:580 , SER A:642 , SER A:643 , ARG A:644 , SF4 A:999
NULL
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ACONITASE_1 (A:350-366)
2: ACONITASE_2 (A:413-426)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACONITASE_1
PS00450
Aconitase family signature 1.
ACON_BOVIN
377-393
1
A:350-366
2
ACONITASE_2
PS01244
Aconitase family signature 2.
ACON_BOVIN
440-453
1
A:413-426
[
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Exons
(17, 17)
Info
All Exons
Exon 1.2 (A:2-31)
Exon 1.3 (A:31-117)
Exon 1.4 (A:118-148)
Exon 1.5 (A:149-201)
Exon 1.6 (A:202-252)
Exon 1.7 (A:252-287)
Exon 1.8 (A:287-317)
Exon 1.9 (A:318-353)
Exon 1.10 (A:353-405)
Exon 1.11 (A:406-430)
Exon 1.12 (A:430-467)
Exon 1.13 (A:468-508)
Exon 1.14 (A:509-560)
Exon 1.15 (A:561-624)
Exon 1.16 (A:625-669)
Exon 1.17 (A:669-709)
Exon 1.18 (A:710-753)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16
16: Boundary 1.16/1.17
17: Boundary 1.17/1.18
18: Boundary 1.18/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000008431
1
ENSBTAE00000314040
chr5:
119723315-119723379
65
ACON_BOVIN
1-12
12
0
-
-
1.2
ENSBTAT00000008431
2
ENSBTAE00000314039
chr5:
119748644-119748780
137
ACON_BOVIN
13-58
46
1
A:2-31
30
1.3
ENSBTAT00000008431
3
ENSBTAE00000068175
chr5:
119754553-119754811
259
ACON_BOVIN
58-144
87
1
A:31-117
87
1.4
ENSBTAT00000008431
4
ENSBTAE00000068177
chr5:
119757942-119758034
93
ACON_BOVIN
145-175
31
1
A:118-148
31
1.5
ENSBTAT00000008431
5
ENSBTAE00000068178
chr5:
119761458-119761616
159
ACON_BOVIN
176-228
53
1
A:149-201
53
1.6
ENSBTAT00000008431
6
ENSBTAE00000068184
chr5:
119761847-119761997
151
ACON_BOVIN
229-279
51
1
A:202-252
51
1.7
ENSBTAT00000008431
7
ENSBTAE00000068188
chr5:
119763299-119763403
105
ACON_BOVIN
279-314
36
1
A:252-287
36
1.8
ENSBTAT00000008431
8
ENSBTAE00000068190
chr5:
119764314-119764405
92
ACON_BOVIN
314-344
31
1
A:287-317
31
1.9
ENSBTAT00000008431
9
ENSBTAE00000068193
chr5:
119765369-119765474
106
ACON_BOVIN
345-380
36
1
A:318-353
36
1.10
ENSBTAT00000008431
10
ENSBTAE00000068197
chr5:
119766612-119766769
158
ACON_BOVIN
380-432
53
1
A:353-405
53
1.11
ENSBTAT00000008431
11
ENSBTAE00000068199
chr5:
119766902-119766975
74
ACON_BOVIN
433-457
25
1
A:406-430
25
1.12
ENSBTAT00000008431
12
ENSBTAE00000068200
chr5:
119767584-119767695
112
ACON_BOVIN
457-494
38
1
A:430-467
38
1.13
ENSBTAT00000008431
13
ENSBTAE00000068201
chr5:
119768754-119768876
123
ACON_BOVIN
495-535
41
1
A:468-508
41
1.14
ENSBTAT00000008431
14
ENSBTAE00000068202
chr5:
119769074-119769229
156
ACON_BOVIN
536-587
52
1
A:509-560
52
1.15
ENSBTAT00000008431
15
ENSBTAE00000068203
chr5:
119770055-119770246
192
ACON_BOVIN
588-651
64
1
A:561-624
64
1.16
ENSBTAT00000008431
16
ENSBTAE00000068204
chr5:
119770621-119770753
133
ACON_BOVIN
652-696
45
1
A:625-669
45
1.17
ENSBTAT00000008431
17
ENSBTAE00000068205
chr5:
119771250-119771371
122
ACON_BOVIN
696-736
41
1
A:669-709
41
1.18
ENSBTAT00000008431
18
ENSBTAE00000293773
chr5:
119771855-119772376
522
ACON_BOVIN
737-780
44
1
A:710-753
44
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1amja2 (A:2-528)
2a: SCOP_d1amja1 (A:529-754)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aconitase iron-sulfur domain
(20)
Superfamily
:
Aconitase iron-sulfur domain
(20)
Family
:
Aconitase iron-sulfur domain
(20)
Protein domain
:
Aconitase A, N-terminal domain
(15)
Cow (Bos taurus) [TaxId: 9913]
(9)
1a
d1amja2
A:2-528
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
LeuD/IlvD-like
(25)
Family
:
LeuD-like
(19)
Protein domain
:
Aconitase A, C-terminal domain
(15)
Cow (Bos taurus) [TaxId: 9913]
(9)
2a
d1amja1
A:529-754
[
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1amjA03 (A:316-490)
1b: CATH_1amjA01 (A:2-202)
2a: CATH_1amjA02 (A:203-315)
3a: CATH_1amjA04 (A:534-754)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Aconitase; domain 3
(16)
Homologous Superfamily
:
Aconitase, domain 3
(16)
Cattle (Bos taurus)
(9)
1a
1amjA03
A:316-490
1b
1amjA01
A:2-202
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aconitase; Domain 2
(16)
Homologous Superfamily
:
Aconitase, Domain 2
(16)
Cattle (Bos taurus)
(9)
2a
1amjA02
A:203-315
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Aconitase; domain 4
(16)
Homologous Superfamily
:
Aconitase, domain 4
(16)
Cattle (Bos taurus)
(9)
3a
1amjA04
A:534-754
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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