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1AM9
Asym. Unit
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Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER
Authors
:
A. Parraga, S. K. Burley
Date
:
25 Jun 97 (Deposition) - 10 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Sterol Regulatory Element Binding Protein, Basic-Helix-Loop- Helix-Leucine Zipper, Srebp, Transcription Factor, Complex (Transcription Regulation/Dna), Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Parraga, L. Bellsolell, A. R. Ferre-D'Amare, S. K. Burley
Co-Crystal Structure Of Sterol Regulatory Element Binding Protein 1A At 2. 3 A Resolution.
Structure V. 6 661 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH D:2003 , HOH D:2004 , HOH D:2005 , HOH D:2006 , HOH D:2007 , HOH D:2008
BINDING SITE FOR RESIDUE MG C 2001
2
AC2
SOFTWARE
HOH A:2009 , HOH A:2012 , HOH A:2013 , HOH B:2010 , HOH B:2011 , HOH B:2014
BINDING SITE FOR RESIDUE MG B 2002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BHLH (A:323-373,B:323-373,C:323-373,D:32...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BHLH
PS50888
Myc-type, basic helix-loop-helix (bHLH) domain profile.
SRBP1_HUMAN
323-373
4
A:323-373
B:323-373
C:323-373
D:323-373
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Exons
(3, 10)
Info
All Exons
Exon 1.6 (A:319-356 | B:320-356 | C:319-356 ...)
Exon 1.7b (A:357-395 | B:357-394 | C:357-395 ...)
Exon 1.8b (A:395-398 | - | C:395-400 | -)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7b
3: Boundary 1.7b/1.8b
4: Boundary 1.8b/1.8h
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000261646
1b
ENSE00001883965
chr17:
17740316-17740041
276
SRBP1_HUMAN
1-31
31
0
-
-
1.3b
ENST00000261646
3b
ENSE00001596459
chr17:
17723835-17723404
432
SRBP1_HUMAN
31-175
145
0
-
-
1.4b
ENST00000261646
4b
ENSE00001776681
chr17:
17723039-17722852
188
SRBP1_HUMAN
175-237
63
0
-
-
1.5
ENST00000261646
5
ENSE00001687138
chr17:
17722768-17722634
135
SRBP1_HUMAN
238-282
45
0
-
-
1.6
ENST00000261646
6
ENSE00001767426
chr17:
17722548-17722327
222
SRBP1_HUMAN
283-356
74
4
A:319-356
B:320-356
C:319-356
D:319-356
38
37
38
38
1.7b
ENST00000261646
7b
ENSE00001654308
chr17:
17721688-17721574
115
SRBP1_HUMAN
357-395
39
4
A:357-395
B:357-394
C:357-395
D:357-394
39
38
39
38
1.8b
ENST00000261646
8b
ENSE00001704753
chr17:
17721230-17721010
221
SRBP1_HUMAN
395-468
74
2
A:395-398
-
C:395-400
-
4
-
6
-
1.8h
ENST00000261646
8h
ENSE00001284623
chr17:
17720771-17720570
202
SRBP1_HUMAN
469-536
68
0
-
-
1.9
ENST00000261646
9
ENSE00001284618
chr17:
17720450-17720272
179
SRBP1_HUMAN
536-595
60
0
-
-
1.10b
ENST00000261646
10b
ENSE00001284615
chr17:
17720032-17719771
262
SRBP1_HUMAN
596-683
88
0
-
-
1.11c
ENST00000261646
11c
ENSE00001017795
chr17:
17719687-17719521
167
SRBP1_HUMAN
683-738
56
0
-
-
1.12
ENST00000261646
12
ENSE00000693018
chr17:
17719342-17719174
169
SRBP1_HUMAN
739-795
57
0
-
-
1.13
ENST00000261646
13
ENSE00000946283
chr17:
17718643-17718535
109
SRBP1_HUMAN
795-831
37
0
-
-
1.14
ENST00000261646
14
ENSE00000341628
chr17:
17718258-17718149
110
SRBP1_HUMAN
831-868
38
0
-
-
1.15b
ENST00000261646
15b
ENSE00000341629
chr17:
17718061-17717929
133
SRBP1_HUMAN
868-912
45
0
-
-
1.16b
ENST00000261646
16b
ENSE00000693009
chr17:
17717724-17717559
166
SRBP1_HUMAN
912-967
56
0
-
-
1.17
ENST00000261646
17
ENSE00000341631
chr17:
17717083-17716883
201
SRBP1_HUMAN
968-1034
67
0
-
-
1.18a
ENST00000261646
18a
ENSE00000946284
chr17:
17716793-17716682
112
SRBP1_HUMAN
1035-1072
38
0
-
-
1.19b
ENST00000261646
19b
ENSE00001522720
chr17:
17716165-17715387
779
SRBP1_HUMAN
1072-1147
76
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1am9a_ (A:)
1b: SCOP_d1am9b_ (B:)
1c: SCOP_d1am9c_ (C:)
1d: SCOP_d1am9d_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
HLH-like
(13)
Superfamily
:
HLH, helix-loop-helix DNA-binding domain
(12)
Family
:
HLH, helix-loop-helix DNA-binding domain
(12)
Protein domain
:
SREBP-1a
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1am9a_
A:
1b
d1am9b_
B:
1c
d1am9c_
C:
1d
d1am9d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1am9B00 (B:320-394)
1b: CATH_1am9D00 (D:319-394)
1c: CATH_1am9A00 (A:319-398)
1d: CATH_1am9C00 (C:319-400)
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
MYOD Basic-Helix-Loop-Helix Domain, subunit B
(12)
Homologous Superfamily
:
MYOD Basic-Helix-Loop-Helix Domain, subunit B
(11)
[unclassified]
(5)
1a
1am9B00
B:320-394
1b
1am9D00
D:319-394
1c
1am9A00
A:319-398
1d
1am9C00
C:319-400
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Solvent
All Atoms
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Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
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