PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ALD
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (220 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ACTIVITY AND SPECIFICITY OF HUMAN ALDOLASES
Authors
:
H. C. Watson
Date
:
05 May 91 (Deposition) - 15 Jan 92 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Lyase (Aldehyde)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Gamblin, G. J. Davies, J. M. Grimes, R. M. Jackson, J. A. Littlechild, H. C. Watson
Activity And Specificity Of Human Aldolases.
J. Mol. Biol. V. 219 573 1991
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048219 (E81Q, chain A, )
2: VAR_000550 (D128G, chain A, )
3: VAR_048220 (G141V, chain A, )
4: VAR_044142 (E206K, chain A, )
5: VAR_044143 (C338Y, chain A, )
6: VAR_044144 (G346S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048219
E
82
Q
ALDOA_HUMAN
Polymorphism
11553107
A
E
81
Q
2
UniProt
VAR_000550
D
129
G
ALDOA_HUMAN
Disease (GSD12)
---
A
D
128
G
3
UniProt
VAR_048220
G
142
V
ALDOA_HUMAN
Polymorphism
11553108
A
G
141
V
4
UniProt
VAR_044142
E
207
K
ALDOA_HUMAN
Disease (GSD12)
---
A
E
206
K
5
UniProt
VAR_044143
C
339
Y
ALDOA_HUMAN
Disease (GSD12)
---
A
C
338
Y
6
UniProt
VAR_044144
G
347
S
ALDOA_HUMAN
Disease (GSD12)
138824667
A
G
346
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (A:221-231)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOA_HUMAN
222-232
1
A:221-231
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.11 (A:1-37)
Exon 1.12 (A:37-107)
Exon 1.13 (A:108-126)
Exon 1.14 (A:126-179)
Exon 1.15 (A:180-207)
Exon 1.16 (A:208-266)
Exon 1.17 (A:266-332)
Exon 1.18a (A:333-363)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7b/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13
4: Boundary 1.13/1.14
5: Boundary 1.14/1.15
6: Boundary 1.15/1.16
7: Boundary 1.16/1.17
8: Boundary 1.17/1.18a
9: Boundary 1.18a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000338110
1b
ENSE00001417980
chr16:
30064491-30064538
48
ALDOA_HUMAN
-
0
0
-
-
1.2
ENST00000338110
2
ENSE00001521141
chr16:
30064785-30064820
36
ALDOA_HUMAN
-
0
0
-
-
1.3
ENST00000338110
3
ENSE00001521140
chr16:
30066105-30066248
144
ALDOA_HUMAN
-
0
0
-
-
1.4
ENST00000338110
4
ENSE00001341096
chr16:
30066493-30066648
156
ALDOA_HUMAN
-
0
0
-
-
1.6b
ENST00000338110
6b
ENSE00001341092
chr16:
30075050-30075569
520
ALDOA_HUMAN
-
0
0
-
-
1.7b
ENST00000338110
7b
ENSE00001341090
chr16:
30075745-30075826
82
ALDOA_HUMAN
-
0
0
-
-
1.11
ENST00000338110
11
ENSE00001711718
chr16:
30078555-30078687
133
ALDOA_HUMAN
1-38
38
1
A:1-37
37
1.12
ENST00000338110
12
ENSE00000992994
chr16:
30078771-30078982
212
ALDOA_HUMAN
38-108
71
1
A:37-107
71
1.13
ENST00000338110
13
ENSE00000992997
chr16:
30079967-30080021
55
ALDOA_HUMAN
109-127
19
1
A:108-126
19
1.14
ENST00000338110
14
ENSE00001707002
chr16:
30080139-30080299
161
ALDOA_HUMAN
127-180
54
1
A:126-179
54
1.15
ENST00000338110
15
ENSE00001786893
chr16:
30080627-30080710
84
ALDOA_HUMAN
181-208
28
1
A:180-207
28
1.16
ENST00000338110
16
ENSE00001741061
chr16:
30080820-30080994
175
ALDOA_HUMAN
209-267
59
1
A:208-266
59
1.17
ENST00000338110
17
ENSE00000992989
chr16:
30081151-30081350
200
ALDOA_HUMAN
267-333
67
1
A:266-332
67
1.18a
ENST00000338110
18a
ENSE00000992996
chr16:
30081438-30081734
297
ALDOA_HUMAN
334-364
31
1
A:333-363
31
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1alda_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Human (Homo sapiens), muscle isozyme [TaxId: 9606]
(3)
1a
d1alda_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1aldA00 (A:1-363)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1aldA00
A:1-363
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (60 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ALD
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help