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1AKJ
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
COMPLEX OF THE HUMAN MHC CLASS I GLYCOPROTEIN HLA-A2 AND THE T CELL CORECEPTOR CD8
Authors
:
J. Tormo, D. I. Stuart, E. Y. Jones
Date
:
21 May 97 (Deposition) - 17 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
T-Cell, Glycoprotein, Signal, Complex, Immunology, Complex (Mhc I/Peptide/Cd8)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. F. Gao, J. Tormo, U. C. Gerth, J. R. Wyer, A. J. Mcmichael, D. I. Stuart, J. I. Bell, E. Y. Jones, B. K. Jakobsen
Crystal Structure Of The Complex Between Human Cd8Alpha(Alpha) And Hla-A2.
Nature V. 387 630 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(23, 24)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_004334 (F9Y, chain A, )
02: VAR_004335 (D30N, chain A, )
03: VAR_016726 (A41G, chain A, )
04: VAR_004336 (Q43R, chain A, )
05: VAR_004337 (K66N, chain A, )
06: VAR_016727 (H70Q, chain A, )
07: VAR_004338 (T73I, chain A, )
08: VAR_016728 (H74D, chain A, )
09: VAR_021020 (G90S, chain D/E, )
10: VAR_004339 (V95L, chain A, )
11: VAR_004340 (R97M, chain A, )
12: VAR_004341 (Y99C, chain A, )
13: VAR_004342 (Y99F, chain A, )
14: VAR_004343 (W107G, chain A, )
15: VAR_004344 (M138K, chain A, )
16: VAR_004345 (A149T, chain A, )
17: VAR_004346 (V152E, chain A, )
18: VAR_004348 (L156Q, chain A, )
19: VAR_004347 (L156W, chain A, )
20: VAR_004349 (T163E, chain A, )
21: VAR_016729 (E166D, chain A, )
22: VAR_016730 (W167G, chain A, )
23: VAR_004350 (A236E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004334
F
33
Y
1A02_HUMAN
Polymorphism
---
A
F
9
Y
02
UniProt
VAR_004335
D
54
N
1A02_HUMAN
Polymorphism
---
A
D
30
N
03
UniProt
VAR_016726
A
65
G
1A02_HUMAN
Polymorphism
---
A
A
41
G
04
UniProt
VAR_004336
Q
67
R
1A02_HUMAN
Polymorphism
---
A
Q
43
R
05
UniProt
VAR_004337
K
90
N
1A02_HUMAN
Polymorphism
---
A
K
66
N
06
UniProt
VAR_016727
H
94
Q
1A02_HUMAN
Polymorphism
---
A
H
70
Q
07
UniProt
VAR_004338
T
97
I
1A02_HUMAN
Polymorphism
---
A
T
73
I
08
UniProt
VAR_016728
H
98
D
1A02_HUMAN
Polymorphism
---
A
H
74
D
09
UniProt
VAR_021020
G
111
S
CD8A_HUMAN
Disease (CD8 deficiency)
---
D/E
G
90
S
10
UniProt
VAR_004339
V
119
L
1A02_HUMAN
Polymorphism
---
A
V
95
L
11
UniProt
VAR_004340
R
121
M
1A02_HUMAN
Polymorphism
---
A
R
97
M
12
UniProt
VAR_004341
Y
123
C
1A02_HUMAN
Polymorphism
---
A
Y
99
C
13
UniProt
VAR_004342
Y
123
F
1A02_HUMAN
Polymorphism
---
A
Y
99
F
14
UniProt
VAR_004343
W
131
G
1A02_HUMAN
Polymorphism
---
A
W
107
G
15
UniProt
VAR_004344
M
162
K
1A02_HUMAN
Polymorphism
---
A
M
138
K
16
UniProt
VAR_004345
A
173
T
1A02_HUMAN
Polymorphism
---
A
A
149
T
17
UniProt
VAR_004346
V
176
E
1A02_HUMAN
Polymorphism
---
A
V
152
E
18
UniProt
VAR_004348
L
180
Q
1A02_HUMAN
Polymorphism
---
A
L
156
Q
19
UniProt
VAR_004347
L
180
W
1A02_HUMAN
Polymorphism
---
A
L
156
W
20
UniProt
VAR_004349
T
187
E
1A02_HUMAN
Polymorphism
---
A
T
163
E
21
UniProt
VAR_016729
E
190
D
1A02_HUMAN
Polymorphism
---
A
E
166
D
22
UniProt
VAR_016730
W
191
G
1A02_HUMAN
Polymorphism
---
A
W
167
G
23
UniProt
VAR_004350
A
260
E
1A02_HUMAN
Polymorphism
---
A
A
236
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
1A02_HUMAN
281-287
1
A:257-263
[
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]
Exons
(2, 4)
Info
All Exons
Exon 1.5b (D:1-114 | E:1-114)
Exon 1.6 (D:114-114 | E:114-114)
View:
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All Exon Boundaries
1: Boundary 1.4a/1.5b
2: Boundary 1.5b/1.6
3: Boundary 1.6/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000283635
4a
ENSE00001897263
chr2:
87018803-87017900
904
CD8A_HUMAN
1-17
17
0
-
-
1.5b
ENST00000283635
5b
ENSE00001220182
chr2:
87017804-87017451
354
CD8A_HUMAN
17-135
119
2
D:1-114
E:1-114
114
114
1.6
ENST00000283635
6
ENSE00001011446
chr2:
87016873-87016763
111
CD8A_HUMAN
135-172
38
2
D:114-114
E:114-114
1
1
1.7
ENST00000283635
7
ENSE00001011450
chr2:
87016556-87016446
111
CD8A_HUMAN
172-209
38
0
-
-
1.8
ENST00000283635
8
ENSE00001011445
chr2:
87015683-87015653
31
CD8A_HUMAN
209-219
11
0
-
-
1.9c
ENST00000283635
9c
ENSE00001843887
chr2:
87013094-87011733
1362
CD8A_HUMAN
219-235
17
0
-
-
[
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]
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d1akjb_ (B:)
2a: SCOP_d1akja1 (A:182-276)
3a: SCOP_d1akjd_ (D:)
3b: SCOP_d1akje_ (E:)
4a: SCOP_d1akja2 (A:1-181)
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(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1akjb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1akja1
A:182-276
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
CD8
(10)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1akjd_
D:
3b
d1akje_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-A2.1 [TaxId: 9606]
(92)
4a
d1akja2
A:1-181
[
close SCOP info
]
CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1akjA01 (A:1-181)
2a: CATH_1akjB00 (B:2-99)
2b: CATH_1akjA02 (A:182-270)
2c: CATH_1akjD00 (D:1-114)
2d: CATH_1akjE00 (E:1-114)
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)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1akjA01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1akjB00
B:2-99
2b
1akjA02
A:182-270
2c
1akjD00
D:1-114
2d
1akjE00
E:1-114
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Pfam Domains
(0, 0)
Info
all PFAM domains
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