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1AKF
Theor. Model
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Theoretical Model (333 KB)
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(1)
Title
:
HOMOLOGOUS-EXTENSION-BASED MODEL OF HUMAN ESTROGEN RECEPTOR WITH BOUND ESTRADIOL, THEORETICAL MODEL
Authors
:
G. J. Maalouf, W. Xu, T. F. Smith, S. C. Mohr
Date
:
16 May 97 (Deposition) - 15 Apr 98 (Release) - 01 Apr 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Transcription Regulation, Steroid Receptor, Nuclear Hormone Receptor, Alpha-Domain Structure, Eukaryotic Transcription Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Maalouf, W. Xu, T. F. Smith, S. C. Mohr
Homology Model For The Ligand-Binding Domain Of The Human Estrogen Receptor.
J. Biomol. Struct. Dyn. V. 15 841 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ESTRADIOL (ESTa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EST
1
Ligand/Ion
ESTRADIOL
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Sites
(1, 1)
Info
All Sites
1: LND (not defined)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
LND
not defined
GLU A:397 , ARG A:394 , TYR A:526 , TRP A:393 , PHE A:425 , GLY A:521 , LEU A:525 , MET A:528
FALL WITHIN 3 - 8 ANGSTROMS OF LIGAND.
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004672 (V364E, chain A, )
2: VAR_070072 (Q375H, chain A, )
3: VAR_004673 (G400V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004672
V
364
E
ESR1_HUMAN
Disease (ESTRR)
---
A
V
364
E
2
UniProt
VAR_070072
Q
375
H
ESR1_HUMAN
Disease (ESTRR)
---
A
Q
375
H
3
UniProt
VAR_004673
G
400
V
ESR1_HUMAN
Unclassified
---
A
G
400
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(5, 5)
Info
All Exons
Exon 1.11d (A:311-366)
Exon 1.14 (A:366-412)
Exon 1.15b (A:412-457)
Exon 1.16a (A:457-518)
Exon 1.17c (A:518-547)
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All Exon Boundaries
1: Boundary 1.10a/1.11d
2: Boundary 1.11d/1.14
3: Boundary 1.14/1.15b
4: Boundary 1.15b/1.16a
5: Boundary 1.16a/1.17c
6: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000338799
4
ENSE00001789210
chr6:
152125566-152126955
1390
ESR1_HUMAN
-
0
0
-
-
1.6f
ENST00000338799
6f
ENSE00001290999
chr6:
152128978-152129499
522
ESR1_HUMAN
1-151
151
0
-
-
1.9
ENST00000338799
9
ENSE00002163508
chr6:
152163732-152163922
191
ESR1_HUMAN
151-215
65
0
-
-
1.10a
ENST00000338799
10a
ENSE00002172842
chr6:
152201790-152201906
117
ESR1_HUMAN
215-254
40
0
-
-
1.11d
ENST00000338799
11d
ENSE00002178920
chr6:
152265308-152265643
336
ESR1_HUMAN
254-366
113
1
A:311-366
56
1.14
ENST00000338799
14
ENSE00000813753
chr6:
152332791-152332929
139
ESR1_HUMAN
366-412
47
1
A:366-412
47
1.15b
ENST00000338799
15b
ENSE00000765262
chr6:
152382126-152382259
134
ESR1_HUMAN
412-457
46
1
A:412-457
46
1.16a
ENST00000338799
16a
ENSE00000765263
chr6:
152415520-152415703
184
ESR1_HUMAN
457-518
62
1
A:457-518
62
1.17c
ENST00000338799
17c
ENSE00001835657
chr6:
152419867-152420188
322
ESR1_HUMAN
518-595
78
1
A:518-547
30
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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