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1AIJ
Asym. Unit
Info
Asym.Unit (305 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (148 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE
Authors
:
M. H. B. Stowell, T. M. Mcphillips, S. M. Soltis, D. C. Rees, E. Abresch, G
Date
:
18 Apr 97 (Deposition) - 22 Oct 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : H,L,M,R,S,T
Biol. Unit 1: H,L,M (1x)
Biol. Unit 2: R,S,T (1x)
Keywords
:
Photosynthetic Reaction Center, Integral Membrane Protein, Charge Neutral
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Stowell, T. M. Mcphillips, D. C. Rees, S. M. Soltis, E. Abresch, G. Feher
Light-Induced Structural Changes In Photosynthetic Reaction Center: Implications For Mechanism Of Electron-Proton Transfer.
Science V. 276 812 1997
(for further references see the
PDB file header
)
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
1e: BACTERIOCHLOROPHYLL A (BCLe)
1f: BACTERIOCHLOROPHYLL A (BCLf)
1g: BACTERIOCHLOROPHYLL A (BCLg)
1h: BACTERIOCHLOROPHYLL A (BCLh)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
2c: BACTERIOPHEOPHYTIN A (BPHc)
2d: BACTERIOPHEOPHYTIN A (BPHd)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
4a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
4b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
4c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
4d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
5a: UBIQUINONE-10 (U10a)
5b: UBIQUINONE-10 (U10b)
5c: UBIQUINONE-10 (U10c)
5d: UBIQUINONE-10 (U10d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
8
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
4
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE2
2
Ligand/Ion
FE (II) ION
4
LDA
4
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
5
U10
4
Ligand/Ion
UBIQUINONE-10
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE2 M 308
02
AC2
SOFTWARE
HIS R:190 , HIS R:230 , HIS S:219 , GLU S:234 , HIS S:266
BINDING SITE FOR RESIDUE FE2 S 308
03
AC3
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , PHE L:181 , THR L:182 , LEU L:185 , BCL L:282 , BPH L:284 , HOH L:308 , TRP M:157 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:310 , LDA M:315
BINDING SITE FOR RESIDUE BCL M 309
04
AC4
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , LEU L:131 , VAL L:157 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:283 , BPH L:285 , TYR M:210 , BCL M:309 , BCL M:310
BINDING SITE FOR RESIDUE BCL L 282
05
AC5
SOFTWARE
VAL L:157 , TYR L:162 , BCL L:282 , BPH L:284 , ALA M:153 , LEU M:156 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:309
BINDING SITE FOR RESIDUE BCL M 310
06
AC6
SOFTWARE
TYR L:128 , LEU L:131 , PHE L:146 , HIS L:153 , LEU L:154 , BCL L:282 , BPH L:285 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , U10 M:311
BINDING SITE FOR RESIDUE BCL L 283
07
AC7
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , GLY M:63 , VAL M:126 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:309 , BCL M:310
BINDING SITE FOR RESIDUE BPH L 284
08
AC8
SOFTWARE
PHE L:41 , ALA L:42 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , HIS L:153 , VAL L:241 , BCL L:282 , BCL L:283 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 285
09
AC9
SOFTWARE
BCL L:283 , LEU M:214 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268 , MET M:272
BINDING SITE FOR RESIDUE U10 M 311
10
BC1
SOFTWARE
LEU L:189 , PHE L:216 , VAL L:220 , GLY L:221 , TYR L:222 , ILE L:224 , ILE L:229 , SER M:30 , GLY M:31
BINDING SITE FOR RESIDUE U10 L 286
11
BC2
SOFTWARE
HIS M:145 , TRP M:148 , ILE M:270
BINDING SITE FOR RESIDUE LDA M 312
12
BC3
SOFTWARE
PHE H:56 , PHE M:258
BINDING SITE FOR RESIDUE LDA M 313
13
BC4
SOFTWARE
SER M:8 , GLN M:9 , LEU M:38 , TRP M:41 , HOH M:396
BINDING SITE FOR RESIDUE LDA M 314
14
BC5
SOFTWARE
MET M:122 , TRP M:157 , VAL M:175 , BCL M:309 , HOH M:351
BINDING SITE FOR RESIDUE LDA M 315
15
BC6
SOFTWARE
HIS R:168 , MET R:174 , ILE R:177 , SER R:178 , THR R:182 , LEU R:185 , BCL R:282 , HOH R:321 , MET S:122 , TRP S:157 , ILE S:179 , HIS S:182 , LEU S:183 , THR S:186 , BCL S:310 , BPH S:311
BINDING SITE FOR RESIDUE BCL S 309
16
BC7
SOFTWARE
PHE R:97 , ALA R:124 , LEU R:131 , TRP R:156 , VAL R:157 , ASN R:166 , PHE R:167 , HIS R:168 , HIS R:173 , ILE R:177 , PHE R:180 , SER R:244 , CYS R:247 , MET R:248 , BCL R:283 , BPH R:284 , TYR S:210 , BCL S:309 , BCL S:310
BINDING SITE FOR RESIDUE BCL R 282
17
BC8
SOFTWARE
VAL R:157 , TYR R:162 , PHE R:181 , BCL R:282 , BCL R:283 , TRP S:66 , ALA S:153 , LEU S:156 , LEU S:160 , THR S:186 , ASN S:187 , SER S:190 , LEU S:196 , PHE S:197 , HIS S:202 , SER S:205 , ILE S:206 , TYR S:210 , GLY S:280 , ILE S:284 , BCL S:309 , BPH S:311
BINDING SITE FOR RESIDUE BCL S 310
18
BC9
SOFTWARE
TYR R:128 , LEU R:131 , PHE R:146 , HIS R:153 , LEU R:154 , BCL R:282 , BPH R:284 , PHE S:197 , GLY S:203 , ILE S:206 , ALA S:207 , TYR S:210 , LEU S:214 , BCL S:310 , HOH S:339
BINDING SITE FOR RESIDUE BCL R 283
19
CC1
SOFTWARE
PHE R:181 , ALA R:184 , LEU R:185 , LEU R:189 , SER S:59 , GLY S:63 , VAL S:126 , TRP S:129 , THR S:146 , ALA S:149 , PHE S:150 , ALA S:273 , THR S:277 , BCL S:309 , BCL S:310
BINDING SITE FOR RESIDUE BPH S 311
20
CC2
SOFTWARE
PHE R:97 , TRP R:100 , GLU R:104 , ILE R:117 , ALA R:120 , PHE R:121 , PHE R:146 , TYR R:148 , SER R:237 , LEU R:238 , VAL R:241 , BCL R:282 , BCL R:283 , TYR S:210 , ALA S:213 , LEU S:214 , MET S:256
BINDING SITE FOR RESIDUE BPH R 284
21
CC3
SOFTWARE
MET S:218 , HIS S:219 , THR S:222 , ALA S:248 , ALA S:249 , TRP S:252 , MET S:256 , ASN S:259 , ALA S:260 , THR S:261 , ILE S:265 , TRP S:268
BINDING SITE FOR RESIDUE U10 S 312
22
CC4
SOFTWARE
THR R:182 , LEU R:189 , PHE R:216 , TYR R:222 , SER R:223 , ILE R:224 , ILE R:229 , LEU R:232
BINDING SITE FOR RESIDUE U10 R 285
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,R:166-192,L:166-192,R:16...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
2
L:166-192
R:166-192
RCEL_RHOSH
167-193
2
L:166-192
R:166-192
RCEM_RHOS4
196-222
2
M:195-221
S:195-221
RCEM_RHOSH
196-222
2
M:195-221
S:195-221
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1aijh1 (H:36-256)
1b: SCOP_d1aijt1 (T:36-256)
2a: SCOP_d1aijl_ (L:)
2b: SCOP_d1aijr_ (R:)
3a: SCOP_d1aijm_ (M:)
3b: SCOP_d1aijs_ (S:)
4a: SCOP_d1aijh2 (H:11-35)
4b: SCOP_d1aijt2 (T:11-35)
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)
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Folds
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(
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d1aijh1
H:36-256
1b
d1aijt1
T:36-256
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d1aijl_
L:
2b
d1aijr_
R:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d1aijm_
M:
3b
d1aijs_
S:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d1aijh2
H:11-35
4b
d1aijt2
T:11-35
[
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]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1aijH02 (H:117-249)
1b: CATH_1aijT02 (T:117-249)
2a: CATH_1aijH01 (H:12-116)
2b: CATH_1aijT01 (T:12-116)
3a: CATH_1aijS01 (S:3-143)
3b: CATH_1aijM01 (M:1-143)
3c: CATH_1aijL01 (L:1-163)
3d: CATH_1aijR01 (R:1-163)
3e: CATH_1aijL02 (L:164-263)
3f: CATH_1aijR02 (R:164-263)
3g: CATH_1aijM02 (M:144-301)
3h: CATH_1aijS02 (S:144-301)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
1a
1aijH02
H:117-249
1b
1aijT02
T:117-249
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
2a
1aijH01
H:12-116
2b
1aijT01
T:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
3a
1aijS01
S:3-143
3b
1aijM01
M:1-143
3c
1aijL01
L:1-163
3d
1aijR01
R:1-163
3e
1aijL02
L:164-263
3f
1aijR02
R:164-263
3g
1aijM02
M:144-301
3h
1aijS02
S:144-301
[
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Pfam Domains
(0, 0)
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all PFAM domains
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