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1AIG
Asym. Unit
Info
Asym.Unit (300 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE D+QB-CHARGE SEPARATED STATE
Authors
:
M. H. B. Stowell, T. M. Mcphillips, S. M. Soltis, D. C. Rees, E. Abresch, G
Date
:
17 Apr 97 (Deposition) - 22 Oct 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : H,L,M,N,O,P
Biol. Unit 1: H,L,M (1x)
Biol. Unit 2: N,O,P (1x)
Keywords
:
Photosynthetic Reaction Center, Integral Membrane Protein, Charge Separated
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Stowell, T. M. Mcphillips, D. C. Rees, S. M. Soltis, E. Abresch, G. Feher
Light-Induced Structural Changes In Photosynthetic Reaction Center: Implications For Mechanism Of Electron-Proton Transfer.
Science V. 276 812 1997
(for further references see the
PDB file header
)
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
1e: BACTERIOCHLOROPHYLL A (BCLe)
1f: BACTERIOCHLOROPHYLL A (BCLf)
1g: BACTERIOCHLOROPHYLL A (BCLg)
1h: BACTERIOCHLOROPHYLL A (BCLh)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
2c: BACTERIOPHEOPHYTIN A (BPHc)
2d: BACTERIOPHEOPHYTIN A (BPHd)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
4a: UBIQUINONE-10 (U10a)
4b: UBIQUINONE-10 (U10b)
4c: UBIQUINONE-10 (U10c)
4d: UBIQUINONE-10 (U10d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
8
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
4
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE2
2
Ligand/Ion
FE (II) ION
4
U10
4
Ligand/Ion
UBIQUINONE-10
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE2 M 308
02
AC2
SOFTWARE
HIS N:190 , HIS N:230 , HIS O:219 , GLU O:234 , HIS O:266
BINDING SITE FOR RESIDUE FE2 O 308
03
AC3
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , PHE L:181 , THR L:182 , LEU L:185 , VAL L:220 , BCL L:282 , BPH L:284 , U10 L:286 , ILE M:50 , TRP M:157 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:310 , HOH M:314
BINDING SITE FOR RESIDUE BCL M 309
04
AC4
SOFTWARE
PHE L:97 , ALA L:124 , ALA L:127 , TYR L:128 , LEU L:131 , TRP L:156 , VAL L:157 , GLY L:161 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , ALA L:245 , CYS L:247 , MET L:248 , BCL L:283 , BPH L:285 , TYR M:210 , BCL M:309 , BCL M:310
BINDING SITE FOR RESIDUE BCL L 282
05
AC5
SOFTWARE
VAL L:157 , TYR L:162 , PHE L:181 , BCL L:282 , BCL L:283 , BPH L:284 , ALA M:153 , LEU M:156 , TRP M:157 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:309
BINDING SITE FOR RESIDUE BCL M 310
06
AC6
SOFTWARE
ILE L:46 , TYR L:128 , PHE L:146 , HIS L:153 , LEU L:154 , BCL L:282 , BPH L:285 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , BCL M:310 , U10 M:311
BINDING SITE FOR RESIDUE BCL L 283
07
AC7
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , VAL M:126 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:309 , BCL M:310
BINDING SITE FOR RESIDUE BPH L 284
08
AC8
SOFTWARE
PHE L:41 , ALA L:42 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , PHE L:146 , TYR L:148 , HIS L:153 , LEU L:238 , VAL L:241 , BCL L:282 , BCL L:283 , TYR M:210 , ALA M:213 , LEU M:214 , MET M:218 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 285
09
AC9
SOFTWARE
PHE L:29 , TRP L:100 , BCL L:283 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , PHE M:258 , ASN M:259 , ALA M:260 , THR M:261 , MET M:262 , ILE M:265 , TRP M:268 , MET M:272
BINDING SITE FOR RESIDUE U10 M 311
10
BC1
SOFTWARE
THR L:182 , LEU L:189 , HIS L:190 , LEU L:193 , VAL L:194 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LEU L:232 , PHE L:242 , PHE L:243 , BCL M:309
BINDING SITE FOR RESIDUE U10 L 286
11
BC2
SOFTWARE
HIS N:168 , MET N:174 , ILE N:177 , SER N:178 , PHE N:181 , THR N:182 , LEU N:185 , BCL N:283 , TRP O:157 , ILE O:179 , HIS O:182 , LEU O:183 , THR O:186 , BCL O:309 , BPH O:310
BINDING SITE FOR RESIDUE BCL N 282
12
BC3
SOFTWARE
PHE N:97 , ALA N:124 , LEU N:131 , TYR N:162 , ASN N:166 , PHE N:167 , HIS N:168 , HIS N:173 , ALA N:176 , ILE N:177 , PHE N:180 , SER N:244 , CYS N:247 , MET N:248 , BCL N:282 , BCL N:284 , BPH N:285 , TYR O:210 , BCL O:309
BINDING SITE FOR RESIDUE BCL N 283
13
BC4
SOFTWARE
VAL N:157 , TYR N:162 , BCL N:282 , BCL N:283 , ALA O:153 , LEU O:156 , TRP O:157 , THR O:186 , ASN O:187 , SER O:190 , LEU O:196 , PHE O:197 , HIS O:202 , SER O:205 , ILE O:206 , LEU O:209 , TYR O:210 , VAL O:276 , GLY O:280 , ILE O:284 , BPH O:310
BINDING SITE FOR RESIDUE BCL O 309
14
BC5
SOFTWARE
TYR N:128 , LEU N:131 , PHE N:146 , HIS N:153 , LEU N:154 , BCL N:283 , BPH N:285 , HOH N:297 , PHE O:197 , GLY O:203 , ILE O:206 , ALA O:207 , TYR O:210
BINDING SITE FOR RESIDUE BCL N 284
15
BC6
SOFTWARE
PHE N:181 , ALA N:184 , LEU N:185 , LEU N:189 , VAL N:220 , BCL N:282 , U10 N:286 , SER O:59 , GLY O:63 , ALA O:125 , VAL O:126 , TRP O:129 , THR O:146 , ALA O:149 , PHE O:150 , ALA O:153 , ALA O:273 , THR O:277 , BCL O:309
BINDING SITE FOR RESIDUE BPH O 310
16
BC7
SOFTWARE
CYS N:92 , ALA N:93 , PHE N:97 , TRP N:100 , GLU N:104 , ILE N:117 , ALA N:120 , PHE N:121 , HIS N:153 , LEU N:238 , BCL N:283 , BCL N:284 , TYR O:210 , ALA O:213 , LEU O:214 , TRP O:252 , MET O:256
BINDING SITE FOR RESIDUE BPH N 285
17
BC8
SOFTWARE
PHE N:29 , GLY N:35 , THR N:38 , PHE N:39 , TRP N:100 , MET O:218 , HIS O:219 , THR O:222 , ALA O:248 , ALA O:249 , TRP O:252 , MET O:256 , PHE O:258 , ASN O:259 , ALA O:260 , ILE O:265 , TRP O:268 , MET O:272
BINDING SITE FOR RESIDUE U10 O 311
18
BC9
SOFTWARE
THR N:182 , LEU N:189 , HIS N:190 , LEU N:193 , GLU N:212 , ASP N:213 , PHE N:216 , TYR N:222 , SER N:223 , ILE N:224 , GLY N:225 , THR N:226 , ILE N:229 , LEU N:232 , PHE O:42 , BPH O:310
BINDING SITE FOR RESIDUE U10 N 286
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,N:166-192,L:166-192,N:16...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
2
L:166-192
N:166-192
RCEL_RHOSH
167-193
2
L:166-192
N:166-192
RCEM_RHOS4
196-222
2
M:195-221
O:195-221
RCEM_RHOSH
196-222
2
M:195-221
O:195-221
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1aigh1 (H:36-258)
1b: SCOP_d1aigp1 (P:36-258)
2a: SCOP_d1aigl_ (L:)
2b: SCOP_d1aign_ (N:)
3a: SCOP_d1aigm_ (M:)
3b: SCOP_d1aigo_ (O:)
4a: SCOP_d1aigh2 (H:11-35)
4b: SCOP_d1aigp2 (P:11-35)
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(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d1aigh1
H:36-258
1b
d1aigp1
P:36-258
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d1aigl_
L:
2b
d1aign_
N:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d1aigm_
M:
3b
d1aigo_
O:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d1aigh2
H:11-35
4b
d1aigp2
P:11-35
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1aigH02 (H:117-249)
1b: CATH_1aigP02 (P:117-249)
2a: CATH_1aigH01 (H:12-116)
2b: CATH_1aigP01 (P:12-116)
3a: CATH_1aigM01 (M:3-143)
3b: CATH_1aigM02 (M:144-301)
3c: CATH_1aigO02 (O:144-301)
3d: CATH_1aigL01 (L:1-163)
3e: CATH_1aigN01 (N:1-163)
3f: CATH_1aigL02 (L:164-263)
3g: CATH_1aigN02 (N:164-263)
3h: CATH_1aigO01 (O:3-143)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
1a
1aigH02
H:117-249
1b
1aigP02
P:117-249
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
2a
1aigH01
H:12-116
2b
1aigP01
P:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26.
(5)
3a
1aigM01
M:3-143
3b
1aigM02
M:144-301
3c
1aigO02
O:144-301
3d
1aigL01
L:1-163
3e
1aigN01
N:1-163
3f
1aigL02
L:164-263
3g
1aigN02
N:164-263
3h
1aigO01
O:3-143
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (300 KB)
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