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1AHZ
Biol. Unit 2
Info
Asym.Unit (186 KB)
Biol.Unit 1 (710 KB)
Biol.Unit 2 (180 KB)
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(1)
Title
:
STRUCTURE OF THE OCTAMERIC FLAVOENZYME VANILLYL-ALCOHOL OXIDASE IN COMPLEX WITH 4-(1-HEPTENYL)PHENOL
Authors
:
A. Mattevi
Date
:
10 Apr 97 (Deposition) - 15 Oct 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Biol. Unit 2: A,B (1x)
Keywords
:
Flavoenzyme, Oxidase, Catalysis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Mattevi, M. W. Fraaije, A. Mozzarelli, L. Olivi, A. Coda, W. J. Van Berkel
Crystal Structures And Inhibitor Binding In The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The Shape Of The Active-Site Cavity Controls Substrate Specificity.
Structure V. 5 907 1997
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: HEPTANYL-P-PHENOL (EPTa)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EPT
1
Ligand/Ion
HEPTANYL-P-PHENOL
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: FAD (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:171 , FAD A:600
BINDING SITE FOR RESIDUE CL A 601
2
AC2
SOFTWARE
LEU B:171 , FAD B:600
BINDING SITE FOR RESIDUE CL B 601
3
AC3
SOFTWARE
PRO A:99 , SER A:101 , ILE A:102 , GLY A:103 , ARG A:104 , ASN A:105 , PRO A:169 , ASP A:170 , LEU A:171 , SER A:175 , ASN A:179 , GLU A:182 , GLY A:184 , VAL A:185 , TYR A:187 , GLY A:260 , ILE A:261 , VAL A:262 , TRP A:413 , HIS A:422 , PHE A:424 , ARG A:504 , LYS A:545 , CL A:601 , EPT A:602
BINDING SITE FOR RESIDUE FAD A 600
4
AC4
SOFTWARE
PRO B:99 , SER B:101 , ILE B:102 , GLY B:103 , ARG B:104 , ASN B:105 , PRO B:169 , ASP B:170 , LEU B:171 , SER B:175 , ASN B:179 , GLU B:182 , GLY B:184 , VAL B:185 , TYR B:187 , GLY B:260 , ILE B:261 , VAL B:262 , TRP B:413 , HIS B:422 , PHE B:424 , ARG B:504 , LYS B:545 , CL B:601
BINDING SITE FOR RESIDUE FAD B 600
5
AC5
SOFTWARE
TYR A:108 , ASP A:170 , TYR A:187 , ARG A:312 , ARG A:398 , GLU A:410 , PHE A:424 , THR A:457 , ILE A:468 , TYR A:503 , ARG A:504 , FAD A:600
BINDING SITE FOR RESIDUE EPT A 602
6
FAD
UNKNOWN
FAD A:600 , FAD B:600
COFACTOR.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:67-272,B:67-272)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
VAOX_PENSI
67-272
2
A:67-272
B:67-272
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ahza2 (A:6-273)
1b: SCOP_d1ahzb2 (B:6-273)
2a: SCOP_d1ahza1 (A:274-560)
2b: SCOP_d1ahzb1 (B:274-560)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
FAD-linked oxidases, N-terminal domain
(29)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
1a
d1ahza2
A:6-273
1b
d1ahzb2
B:6-273
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Vanillyl-alcohol oxidase-like
(20)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
2a
d1ahza1
A:274-560
2b
d1ahzb1
B:274-560
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1ahzA01 (A:6-128)
1b: CATH_1ahzB01 (B:6-128)
2a: CATH_1ahzA02 (A:129-151,A:165-215,A:235-271)
2b: CATH_1ahzB02 (B:129-151,B:165-215,B:235-271)
3a: CATH_1ahzA03 (A:276-506)
3b: CATH_1ahzB03 (B:276-506)
4a: CATH_1ahzA04 (A:507-559)
4b: CATH_1ahzB04 (B:507-559)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
(50)
Homologous Superfamily
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
(50)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
1a
1ahzA01
A:6-128
1b
1ahzB01
B:6-128
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
2a
1ahzA02
A:129-151,A:165-215,A:235-271
2b
1ahzB02
B:129-151,B:165-215,B:235-271
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
3a
1ahzA03
A:276-506
3b
1ahzB03
B:276-506
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
4a
1ahzA04
A:507-559
4b
1ahzB04
B:507-559
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (186 KB)
Header - Asym.Unit
Biol.Unit 1 (710 KB)
Header - Biol.Unit 1
Biol.Unit 2 (180 KB)
Header - Biol.Unit 2
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