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1AHW
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
A COMPLEX OF EXTRACELLULAR DOMAIN OF TISSUE FACTOR WITH AN INHIBITORY FAB (5G9)
Authors
:
M. Huang, R. Syed, E. A. Stura, M. J. Stone, R. S. Stefanko, W. Ruf, T. S. Edgington, I. A. Wilson
Date
:
10 Apr 97 (Deposition) - 25 Feb 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Blood Coagulation, Tissue Factor, Fab, Complex, Antibody, Complex (Immunoglobulin/Tissue Factor)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Huang, R. Syed, E. A. Stura, M. J. Stone, R. S. Stefanko, W. Ruf, T. S. Edgington, I. A. Wilson
The Mechanism Of An Inhibitory Antibody On Tf-Initiated Blood Coagulation Revealed By The Crystal Structures Of Human Tissue Factor, Fab 5G9 And Tf. 5G9 Complex.
J. Mol. Biol. V. 275 873 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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Sites
(2, 2)
Info
All Sites
1: BSC (UNKNOWN)
2: BSF (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BSC
UNKNOWN
TYR C:156 , LYS C:169 , ARG C:200 , LYS C:201
KEY TF EPITOPE RESIDUES FOR 5G9.
2
BSF
UNKNOWN
TYR F:156 , LYS F:169 , ARG F:200 , LYS F:201
KEY TF EPITOPE RESIDUES FOR 5G9.
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014298 (T4A, chain C/F, )
2: VAR_014299 (I113V, chain C/F, )
3: VAR_012008 (R131W, chain C/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014298
T
36
A
TF_HUMAN
Polymorphism
3917604
C/F
T
4
A
2
UniProt
VAR_014299
I
145
V
TF_HUMAN
Polymorphism
3917627
C/F
I
113
V
3
UniProt
VAR_012008
R
163
W
TF_HUMAN
Polymorphism
5901
C/F
R
131
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TISSUE_FACTOR (C:45-62,F:45-62)
2: IG_MHC (A:192-198,D:192-198)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TISSUE_FACTOR
PS00621
Tissue factor signature.
TF_HUMAN
77-94
2
C:45-62
F:45-62
2
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
A:192-198
D:192-198
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Exons
(4, 8)
Info
All Exons
Exon 1.3 (C:4-39 | F:4-39)
Exon 1.4 (C:39-106 (gaps) | F:39-106 (gaps))
Exon 1.5b (C:106-165 | F:106-165)
Exon 1.6 (C:166-211 | F:166-211)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6
5: Boundary 1.6/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000334047
1a
ENSE00001452073
chr1:
95007356-95007093
264
TF_HUMAN
1-34
34
0
-
-
1.3
ENST00000334047
3
ENSE00000777349
chr1:
95005924-95005813
112
TF_HUMAN
34-71
38
2
C:4-39
F:4-39
36
36
1.4
ENST00000334047
4
ENSE00001329748
chr1:
95001720-95001521
200
TF_HUMAN
71-138
68
2
C:39-106 (gaps)
F:39-106 (gaps)
68
68
1.5b
ENST00000334047
5b
ENSE00000777351
chr1:
94998824-94998646
179
TF_HUMAN
138-197
60
2
C:106-165
F:106-165
60
60
1.6
ENST00000334047
6
ENSE00000777352
chr1:
94998036-94997877
160
TF_HUMAN
198-251
54
2
C:166-211
F:166-211
46
46
1.7b
ENST00000334047
7b
ENSE00001906129
chr1:
94996152-94994781
1372
TF_HUMAN
251-295
45
0
-
-
[
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SCOP Domains
(5, 12)
Info
All SCOP Domains
1a: SCOP_d1ahwc1 (C:4-106)
1b: SCOP_d1ahwc2 (C:107-211)
1c: SCOP_d1ahwf1 (F:4-106)
1d: SCOP_d1ahwf2 (F:107-211)
2a: SCOP_d1ahwb2 (B:118-214)
2b: SCOP_d1ahwe2 (E:118-214)
3a: SCOP_d1ahwa2 (A:109-214)
3b: SCOP_d1ahwd2 (D:109-214)
4a: SCOP_d1ahwb1 (B:1-117)
4b: SCOP_d1ahwe1 (E:1-117)
5a: SCOP_d1ahwa1 (A:1-108)
5b: SCOP_d1ahwd1 (D:1-108)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Extracellular region of human tissue factor
(33)
Human (Homo sapiens) [TaxId: 9606]
(32)
1a
d1ahwc1
C:4-106
1b
d1ahwc2
C:107-211
1c
d1ahwf1
F:4-106
1d
d1ahwf2
F:107-211
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
2a
d1ahwb2
B:118-214
2b
d1ahwe2
E:118-214
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
3a
d1ahwa2
A:109-214
3b
d1ahwd2
D:109-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(31)
4a
d1ahwb1
B:1-117
4b
d1ahwe1
E:1-117
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
5a
d1ahwa1
A:1-108
5b
d1ahwd1
D:1-108
[
close SCOP info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1ahwD02 (D:109-211)
1b: CATH_1ahwB02 (B:118-214)
1c: CATH_1ahwE02 (E:118-214)
1d: CATH_1ahwC01 (C:4-105)
1e: CATH_1ahwF01 (F:4-105)
1f: CATH_1ahwC02 (C:106-210)
1g: CATH_1ahwF02 (F:106-210)
1h: CATH_1ahwA02 (A:109-210)
1i: CATH_1ahwB01 (B:1-117)
1j: CATH_1ahwE01 (E:1-117)
1k: CATH_1ahwA01 (A:1-108)
1l: CATH_1ahwD01 (D:1-108)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1ahwD02
D:109-211
1b
1ahwB02
B:118-214
1c
1ahwE02
E:118-214
1d
1ahwC01
C:4-105
1e
1ahwF01
F:4-105
1f
1ahwC02
C:106-210
1g
1ahwF02
F:106-210
1h
1ahwA02
A:109-210
1i
1ahwB01
B:1-117
1j
1ahwE01
E:1-117
1k
1ahwA01
A:1-108
1l
1ahwD01
D:1-108
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (191 KB)
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