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1AGN
Asym. Unit
Info
Asym.Unit (207 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (199 KB)
Biol.Unit 4 (200 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN SIGMA ALCOHOL DEHYDROGENASE
Authors
:
T. D. Hurley, P. Xie
Date
:
04 Jun 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Xie, S. H. Parsons, D. C. Speckhard, W. F. Bosron, T. D. Hurley
X-Ray Structure Of Human Class Iv Sigmasigma Alcohol Dehydrogenase. Structural Basis For Substrate Specificity.
J. Biol. Chem. V. 272 18558 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
10
Ligand/Ion
ACETATE ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
ZN
16
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: ZN1 (UNKNOWN)
32: ZN2 (UNKNOWN)
33: ZN3 (UNKNOWN)
34: ZN4 (UNKNOWN)
35: ZN5 (UNKNOWN)
36: ZN6 (UNKNOWN)
37: ZN7 (UNKNOWN)
38: ZN8 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111
BINDING SITE FOR RESIDUE ZN A 375
02
AC2
SOFTWARE
CYS A:46 , THR A:48 , HIS A:67 , CYS A:174 , NAD A:377 , ACT A:378
BINDING SITE FOR RESIDUE ZN A 376
03
AC3
SOFTWARE
HIS A:271 , NAD A:377 , ACT A:501
BINDING SITE FOR RESIDUE ZN A 401
04
AC4
SOFTWARE
THR A:48 , MET A:141 , ZN A:376 , NAD A:377
BINDING SITE FOR RESIDUE ACT A 378
05
AC5
SOFTWARE
HIS A:271 , NAD A:377 , ZN A:401
BINDING SITE FOR RESIDUE ACT A 501
06
AC6
SOFTWARE
GLU A:357 , GLU A:360 , PRO C:136 , HIS C:138
BINDING SITE FOR RESIDUE ACT A 502
07
AC7
SOFTWARE
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111
BINDING SITE FOR RESIDUE ZN B 375
08
AC8
SOFTWARE
CYS B:46 , HIS B:67 , CYS B:174 , ACT B:378
BINDING SITE FOR RESIDUE ZN B 376
09
AC9
SOFTWARE
HIS B:271 , NAD B:377 , ACT B:501
BINDING SITE FOR RESIDUE ZN B 401
10
BC1
SOFTWARE
HIS B:138 , GLU D:357 , GLU D:360
BINDING SITE FOR RESIDUE ZN B 403
11
BC2
SOFTWARE
ASP B:341 , ACT B:502 , ACT B:503 , GLU D:99
BINDING SITE FOR RESIDUE ZN B 402
12
BC3
SOFTWARE
CYS B:46 , THR B:48 , HIS B:67 , PHE B:93 , MET B:141 , CYS B:174 , ZN B:376 , NAD B:377
BINDING SITE FOR RESIDUE ACT B 378
13
BC4
SOFTWARE
HIS B:271 , NAD B:377 , ZN B:401
BINDING SITE FOR RESIDUE ACT B 501
14
BC5
SOFTWARE
ASP B:341 , ZN B:402 , LYS D:34 , GLU D:99
BINDING SITE FOR RESIDUE ACT B 503
15
BC6
SOFTWARE
ASP B:341 , ZN B:402 , GLU D:99
BINDING SITE FOR RESIDUE ACT B 502
16
BC7
SOFTWARE
CYS C:97 , CYS C:100 , CYS C:103 , CYS C:111 , ILE C:112
BINDING SITE FOR RESIDUE ZN C 375
17
BC8
SOFTWARE
CYS C:46 , THR C:48 , HIS C:67 , CYS C:174 , NAD C:377
BINDING SITE FOR RESIDUE ZN C 376
18
BC9
SOFTWARE
HIS C:271 , NAD C:377
BINDING SITE FOR RESIDUE ZN C 401
19
CC1
SOFTWARE
PHE C:93 , VAL C:294 , NAD C:377 , PHE D:309
BINDING SITE FOR RESIDUE ACT C 378
20
CC2
SOFTWARE
CYS D:97 , CYS D:100 , CYS D:103 , CYS D:111
BINDING SITE FOR RESIDUE ZN D 375
21
CC3
SOFTWARE
CYS D:46 , THR D:48 , HIS D:67 , CYS D:174 , ACT D:378
BINDING SITE FOR RESIDUE ZN D 376
22
CC4
SOFTWARE
HIS D:271 , NAD D:377 , ACT D:501
BINDING SITE FOR RESIDUE ZN D 401
23
CC5
SOFTWARE
GLU A:25 , GLU D:252 , GLU D:256
BINDING SITE FOR RESIDUE ZN D 402
24
CC6
SOFTWARE
HIS D:138
BINDING SITE FOR RESIDUE ZN D 403
25
CC7
SOFTWARE
THR D:48 , MET D:141 , VAL D:294 , ZN D:376 , NAD D:377
BINDING SITE FOR RESIDUE ACT D 378
26
CC8
SOFTWARE
HIS D:271 , NAD D:377 , ZN D:401
BINDING SITE FOR RESIDUE ACT D 501
27
CC9
SOFTWARE
CYS A:46 , ARG A:47 , THR A:48 , HIS A:51 , CYS A:174 , THR A:178 , LEU A:200 , GLY A:201 , GLY A:202 , VAL A:203 , ASP A:223 , LEU A:224 , LYS A:228 , ILE A:269 , GLY A:270 , HIS A:271 , VAL A:292 , GLY A:293 , VAL A:294 , CYS A:317 , PHE A:319 , ARG A:369 , ZN A:376 , ACT A:378 , ZN A:401 , ACT A:501 , PHE B:309
BINDING SITE FOR RESIDUE NAD A 377
28
DC1
SOFTWARE
PHE A:309 , ARG B:47 , THR B:48 , HIS B:51 , CYS B:174 , THR B:178 , GLY B:199 , LEU B:200 , GLY B:201 , GLY B:202 , VAL B:203 , ASP B:223 , LYS B:228 , VAL B:268 , ILE B:269 , HIS B:271 , VAL B:292 , VAL B:294 , CYS B:317 , VAL B:318 , PHE B:319 , ARG B:369 , ACT B:378 , ZN B:401 , ACT B:501
BINDING SITE FOR RESIDUE NAD B 377
29
DC2
SOFTWARE
ARG C:47 , THR C:48 , HIS C:51 , CYS C:174 , THR C:178 , LEU C:200 , GLY C:201 , GLY C:202 , VAL C:203 , ASP C:223 , ASN C:225 , LYS C:228 , ILE C:269 , VAL C:292 , GLY C:293 , VAL C:294 , CYS C:317 , PHE C:319 , ARG C:369 , ZN C:376 , ACT C:378 , ZN C:401 , PHE D:309
BINDING SITE FOR RESIDUE NAD C 377
30
DC3
SOFTWARE
PHE C:309 , ARG D:47 , THR D:48 , HIS D:51 , THR D:178 , LEU D:200 , GLY D:201 , GLY D:202 , VAL D:203 , ASP D:223 , LEU D:224 , LYS D:228 , ILE D:269 , HIS D:271 , VAL D:292 , GLY D:293 , VAL D:294 , CYS D:317 , VAL D:318 , PHE D:319 , ARG D:369 , ACT D:378 , ZN D:401 , ACT D:501
BINDING SITE FOR RESIDUE NAD D 377
31
ZN1
UNKNOWN
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111 , ZN A:375
ZINC BINDING SITE
32
ZN2
UNKNOWN
CYS A:46 , HIS A:67 , CYS A:174 , ZN A:376 , ACT A:378
ZINC BINDING SITE
33
ZN3
UNKNOWN
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111 , ZN B:375
ZINC BINDING SITE
34
ZN4
UNKNOWN
CYS B:46 , HIS B:67 , CYS B:174 , ZN B:376 , ACT B:378
ZINC BINDING SITE
35
ZN5
UNKNOWN
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111 , ZN A:375
ZINC BINDING SITE
36
ZN6
UNKNOWN
CYS A:46 , HIS A:67 , CYS A:174 , ZN A:376 , ACT A:378
ZINC BINDING SITE
37
ZN7
UNKNOWN
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111 , ZN B:375
ZINC BINDING SITE
38
ZN8
UNKNOWN
CYS B:46 , HIS B:67 , CYS B:174 , ZN B:376 , ACT B:378
ZINC BINDING SITE
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024364 (G79A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024364
G
92
A
ADH7_HUMAN
Polymorphism
1573496
A/B/C/D
G
79
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:66-80,B:66-80,C:66-80,D:66-80)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH7_HUMAN
79-93
4
A:66-80
B:66-80
C:66-80
D:66-80
[
close PROSITE info
]
Exons
(9, 36)
Info
All Exons
Exon 1.1b (A:1-5 | B:1-5 | C:1-5 | D:1-5)
Exon 1.5 (A:6-39 | B:6-39 | C:6-39 | D:6-39)
Exon 1.6 (A:40-86 | B:40-86 | C:40-86 | D:40...)
Exon 1.7 (A:86-115 | B:86-115 | C:86-115 | D...)
Exon 1.8b (A:115-188 (gaps) | B:115-188 (gaps...)
Exon 1.9 (A:189-275 | B:189-275 | C:189-275 ...)
Exon 1.10 (A:276-321 | B:276-321 | C:276-321 ...)
Exon 1.11b (A:321-367 | B:321-367 | C:321-367 ...)
Exon 1.12d (A:367-374 | B:367-374 | C:367-374 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8b
06: Boundary 1.8b/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11b
09: Boundary 1.11b/1.12d
10: Boundary 1.12d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000209665
1b
ENSE00001375930
chr4:
100356525-100356373
153
ADH7_HUMAN
1-18
18
4
A:1-5
B:1-5
C:1-5
D:1-5
5
5
5
5
1.5
ENST00000209665
5
ENSE00001667041
chr4:
100350790-100350689
102
ADH7_HUMAN
19-52
34
4
A:6-39
B:6-39
C:6-39
D:6-39
34
34
34
34
1.6
ENST00000209665
6
ENSE00001323821
chr4:
100349787-100349649
139
ADH7_HUMAN
53-99
47
4
A:40-86
B:40-86
C:40-86
D:40-86
47
47
47
47
1.7
ENST00000209665
7
ENSE00000733632
chr4:
100349331-100349244
88
ADH7_HUMAN
99-128
30
4
A:86-115
B:86-115
C:86-115
D:86-115
30
30
30
30
1.8b
ENST00000209665
8b
ENSE00000733629
chr4:
100349146-100348930
217
ADH7_HUMAN
128-200
73
4
A:115-188 (gaps)
B:115-188 (gaps)
C:115-188 (gaps)
D:115-188 (gaps)
74
74
74
74
1.9
ENST00000209665
9
ENSE00000733625
chr4:
100341950-100341690
261
ADH7_HUMAN
201-287
87
4
A:189-275
B:189-275
C:189-275
D:189-275
87
87
87
87
1.10
ENST00000209665
10
ENSE00000733622
chr4:
100340278-100340143
136
ADH7_HUMAN
288-333
46
4
A:276-321
B:276-321
C:276-321
D:276-321
46
46
46
46
1.11b
ENST00000209665
11b
ENSE00000801334
chr4:
100336773-100336635
139
ADH7_HUMAN
333-379
47
4
A:321-367
B:321-367
C:321-367
D:321-367
47
47
47
47
1.12d
ENST00000209665
12d
ENSE00001370955
chr4:
100334329-100333418
912
ADH7_HUMAN
379-386
8
4
A:367-374
B:367-374
C:367-374
D:367-374
8
8
8
8
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1agna1 (A:1-162,A:339-374)
1b: SCOP_d1agnb1 (B:1-162,B:339-374)
1c: SCOP_d1agnc1 (C:1-162,C:339-374)
1d: SCOP_d1agnd1 (D:1-162,D:339-374)
2a: SCOP_d1agna2 (A:163-338)
2b: SCOP_d1agnb2 (B:163-338)
2c: SCOP_d1agnc2 (C:163-338)
2d: SCOP_d1agnd2 (D:163-338)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1agna1
A:1-162,A:339-374
1b
d1agnb1
B:1-162,B:339-374
1c
d1agnc1
C:1-162,C:339-374
1d
d1agnd1
D:1-162,D:339-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1agna2
A:163-338
2b
d1agnb2
B:163-338
2c
d1agnc2
C:163-338
2d
d1agnd2
D:163-338
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1agnA02 (A:179-317)
1b: CATH_1agnB02 (B:179-317)
1c: CATH_1agnC02 (C:179-317)
1d: CATH_1agnD02 (D:179-317)
2a: CATH_1agnA01 (A:1-178,A:318-374)
2b: CATH_1agnB01 (B:1-178,B:318-374)
2c: CATH_1agnC01 (C:1-178,C:318-374)
2d: CATH_1agnD01 (D:1-178,D:318-374)
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1agnA02
A:179-317
1b
1agnB02
B:179-317
1c
1agnC02
C:179-317
1d
1agnD02
D:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1agnA01
A:1-178,A:318-374
2b
1agnB01
B:1-178,B:318-374
2c
1agnC01
C:1-178,C:318-374
2d
1agnD01
D:1-178,D:318-374
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (207 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (102 KB)
Header - Biol.Unit 2
Biol.Unit 3 (199 KB)
Header - Biol.Unit 3
Biol.Unit 4 (200 KB)
Header - Biol.Unit 4
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