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1AGM
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
REFINED STRUCTURE FOR THE COMPLEX OF ACARBOSE WITH GLUCOAMYLASE FROM ASPERGILLUS AWAMORI VAR. X100 TO 2.4 ANGSTROMS RESOLUTION
Authors
:
A. E. Aleshin, L. M. Firsov, R. B. Honzatko
Date
:
13 May 94 (Deposition) - 30 Sep 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Aleshin, L. M. Firsov, R. B. Honzatko
Refined Structure For The Complex Of Acarbose With Glucoamylase From Aspergillus Awamori Var. X100 To 2. 4-A Resolution.
J. Biol. Chem. V. 269 15631 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 25)
Info
All Hetero Components
1a: ALPHA-ACARBOSE (ACRa)
1b: ALPHA-ACARBOSE (ACRb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACR
2
Ligand/Ion
ALPHA-ACARBOSE
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
MAN
17
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: SB1 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:171 , THR A:173 , SER A:184 , TYR A:223 , CYS A:449 , ALA A:451 , NAG A:473B , HOH A:600 , HOH A:613 , HOH A:663 , HOH A:725 , HOH A:782
BINDING SITE FOR RESIDUE NAG A 472A
02
AC2
SOFTWARE
CYS A:449 , NAG A:472A , BMA A:474C , MAN A:476G , HOH A:725 , HOH A:790 , HOH A:871 , HOH A:923
BINDING SITE FOR RESIDUE NAG A 473B
03
AC3
SOFTWARE
NAG A:473B , MAN A:475D , HOH A:972
BINDING SITE FOR RESIDUE BMA A 474C
04
AC4
SOFTWARE
SER A:226 , PHE A:237 , BMA A:474C , MAN A:476G
BINDING SITE FOR RESIDUE MAN A 475D
05
AC5
SOFTWARE
ASN A:236 , PHE A:237 , ASP A:238 , SER A:239 , NAG A:473B , MAN A:475D , HOH A:870
BINDING SITE FOR RESIDUE MAN A 476G
06
AC6
SOFTWARE
TRP A:28 , ASN A:395 , SER A:397 , ASP A:414 , NAG A:478B , HOH A:764
BINDING SITE FOR RESIDUE NAG A 477A
07
AC7
SOFTWARE
ARG A:413 , NAG A:477A , BMA A:479C , MAN A:482E , MAN A:483F , HOH A:684
BINDING SITE FOR RESIDUE NAG A 478B
08
AC8
SOFTWARE
ARG A:413 , NAG A:478B , MAN A:480D , MAN A:482E , HOH A:906 , HOH A:1312
BINDING SITE FOR RESIDUE BMA A 479C
09
AC9
SOFTWARE
BMA A:479C , MAN A:481G , HOH A:864 , HOH A:1062
BINDING SITE FOR RESIDUE MAN A 480D
10
BC1
SOFTWARE
SER A:30 , PRO A:41 , THR A:43 , PHE A:49 , MAN A:480D , MAN A:484H , HOH A:788 , HOH A:808 , HOH A:864
BINDING SITE FOR RESIDUE MAN A 481G
11
BC2
SOFTWARE
NAG A:478B , BMA A:479C , MAN A:483F , HOH A:753 , HOH A:1320 , HOH A:1325 , HOH A:1391
BINDING SITE FOR RESIDUE MAN A 482E
12
BC3
SOFTWARE
SER A:42 , ASN A:45 , SER A:411 , ARG A:413 , NAG A:478B , MAN A:482E , HOH A:746 , HOH A:1329
BINDING SITE FOR RESIDUE MAN A 483F
13
BC4
SOFTWARE
THR A:43 , MAN A:481G
BINDING SITE FOR RESIDUE MAN A 484H
14
BC5
SOFTWARE
GLU A:439 , THR A:440 , SER A:441 , ALA A:442 , SER A:443 , SER A:444 , HOH A:1109
BINDING SITE FOR RESIDUE MAN A 485
15
BC6
SOFTWARE
SER A:444 , PRO A:446 , HOH A:661 , HOH A:984
BINDING SITE FOR RESIDUE MAN A 486
16
BC7
SOFTWARE
THR A:452 , SER A:453 , MAN A:488 , HOH A:839 , HOH A:1171 , HOH A:1349 , HOH A:1395
BINDING SITE FOR RESIDUE MAN A 487
17
BC8
SOFTWARE
SER A:119 , GLU A:153 , SER A:453 , MAN A:487 , HOH A:825 , HOH A:869 , HOH A:943
BINDING SITE FOR RESIDUE MAN A 488
18
BC9
SOFTWARE
SER A:119 , TRP A:120 , TYR A:175 , SER A:455 , TYR A:458 , ACR A:495 , ACR A:496 , HOH A:632 , HOH A:674 , HOH A:687 , HOH A:1308
BINDING SITE FOR RESIDUE MAN A 489
19
CC1
SOFTWARE
ARG A:122 , PRO A:123 , ARG A:125 , ARG A:160 , THR A:173 , GLY A:174 , ASN A:182 , THR A:457 , MAN A:491 , HOH A:1005 , HOH A:1006 , HOH A:1014
BINDING SITE FOR RESIDUE MAN A 490
20
CC2
SOFTWARE
PRO A:157 , ARG A:160 , GLN A:172 , THR A:173 , SER A:459 , SER A:460 , MAN A:490 , HOH A:712 , HOH A:806 , HOH A:919 , HOH A:1004 , HOH A:1007 , HOH A:1076
BINDING SITE FOR RESIDUE MAN A 491
21
CC3
SOFTWARE
ALA A:86 , ILE A:87 , GLY A:90 , SER A:460 , VAL A:461 , MAN A:493 , HOH A:711 , HOH A:733
BINDING SITE FOR RESIDUE MAN A 492
22
CC4
SOFTWARE
SER A:460 , THR A:462 , MAN A:492 , MAN A:494 , HOH A:860 , HOH A:905
BINDING SITE FOR RESIDUE MAN A 493
23
CC5
SOFTWARE
THR A:462 , THR A:464 , MAN A:493 , HOH A:712 , HOH A:1316 , HOH A:1379
BINDING SITE FOR RESIDUE MAN A 494
24
CC6
SOFTWARE
TYR A:48 , TRP A:52 , ARG A:54 , ASP A:55 , TRP A:120 , GLY A:121 , THR A:148 , LEU A:177 , TRP A:178 , GLU A:179 , GLU A:180 , ARG A:305 , LEU A:415 , TRP A:417 , MAN A:489 , ACR A:496 , HOH A:500 , HOH A:825 , HOH A:1102 , HOH A:1191 , HOH A:1301 , HOH A:1309 , HOH A:1347
BINDING SITE FOR RESIDUE ACR A 495
25
CC7
SOFTWARE
TYR A:48 , TRP A:52 , ARG A:54 , ASP A:55 , TRP A:120 , GLY A:121 , THR A:148 , LEU A:177 , TRP A:178 , GLU A:179 , GLU A:180 , ARG A:305 , LEU A:415 , TRP A:417 , MAN A:489 , ACR A:495 , HOH A:500 , HOH A:825 , HOH A:1102 , HOH A:1191 , HOH A:1309 , HOH A:1347
BINDING SITE FOR RESIDUE ACR A 496
26
SB1
AUTHOR
ARG A:54 , ASP A:55 , LEU A:177 , GLU A:179 , ARG A:305 , GLU A:400 , HOH A:500
SUBSITE 1 OF THE ACTIVE SITE
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLUCOAMYLASE (A:173-183,A:173-183)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUCOAMYLASE
PS00820
Glucoamylase active site region signature.
AMYG_ASPKA
196-206
1
A:173-183
AMYG_ASPAW
197-207
1
A:173-183
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1agma_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Glucoamylase
(10)
Protein domain
:
Glucoamylase
(9)
Aspergillus awamori, variant x100 [TaxId: 105351]
(6)
1a
d1agma_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1agmA00 (A:1-471)
View:
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Classes
(
)
(
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Architectures
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(
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Aspergillus awamori. Organism_taxid: 105351
(4)
1a
1agmA00
A:1-471
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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