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1AFW
Asym. Unit
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Asym.Unit (134 KB)
Biol.Unit 1 (130 KB)
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(1)
Title
:
THE 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE DIMERIC PEROXISOMAL THIOLASE OF SACCHAROMYCES CEREVISIAE
Authors
:
M. Mathieu, R. K. Wierenga
Date
:
15 Mar 97 (Deposition) - 16 Jun 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Thiolase, Fatty Acid Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mathieu, Y. Modis, J. P. Zeelen, C. K. Engel, R. A. Abagyan, A. Ahlberg, B. Rasmussen, V. S. Lamzin, W. H. Kunau, R. K. Wierenga
The 1. 8 A Crystal Structure Of The Dimeric Peroxisomal 3-Ketoacyl-Coa Thiolase Of Saccharomyces Cerevisiae: Implications For Substrate Binding And Reaction Mechanism.
J. Mol. Biol. V. 273 714 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
1b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
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No.
Name
Count
Type
Full Name
1
MRD
2
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AVA (UNKNOWN)
4: AVB (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:124 , CYS A:182 , LEU A:183 , ILE A:184 , HOH A:533 , HOH A:615
BINDING SITE FOR RESIDUE MRD A 501
2
AC2
SOFTWARE
GLN B:124 , CYS B:182 , LEU B:183 , ILE B:184 , HOH B:534 , HOH B:642
BINDING SITE FOR RESIDUE MRD B 502
3
AVA
UNKNOWN
CYS A:125 , HIS A:375 , CYS A:403
ACTIVE SITE IN CHAIN A.
4
AVB
UNKNOWN
CYS B:125 , HIS B:375 , CYS B:403
ACTIVE SITE IN CHAIN B.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:121-139,B:121-139)
2: THIOLASE_2 (A:365-381,B:365-381)
3: THIOLASE_3 (A:398-411,B:398-411)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIK_YEAST
121-139
2
A:121-139
B:121-139
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIK_YEAST
365-381
2
A:365-381
B:365-381
3
THIOLASE_3
PS00099
Thiolases active site.
THIK_YEAST
398-411
2
A:398-411
B:398-411
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:25-417 (gaps) | B:25-417)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YIL160C
1
YIL160C.1
IX:41444-40191
1254
THIK_YEAST
1-417
417
2
A:25-417 (gaps)
B:25-417
393
393
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1afwa1 (A:25-293)
1b: SCOP_d1afwa2 (A:294-417)
1c: SCOP_d1afwb1 (B:25-293)
1d: SCOP_d1afwb2 (B:294-417)
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Thiolase
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1afwa1
A:25-293
1b
d1afwa2
A:294-417
1c
d1afwb1
B:25-293
1d
d1afwb2
B:294-417
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1afwA02 (A:174-222,A:303-414)
1b: CATH_1afwB02 (B:174-222,B:303-414)
1c: CATH_1afwA01 (A:28-160,A:223-302)
1d: CATH_1afwB01 (B:28-160,B:223-302)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Baker's yeast (Saccharomyces cerevisiae)
(2)
1a
1afwA02
A:174-222,A:303-414
1b
1afwB02
B:174-222,B:303-414
1c
1afwA01
A:28-160,A:223-302
1d
1afwB01
B:28-160,B:223-302
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Pfam Domains
(0, 0)
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Asym.Unit (134 KB)
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