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1AFD
Biol. Unit 1
Info
Asym.Unit (86 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
STRUCTURAL BASIS OF GALACTOSE RECOGNITION IN C-TYPE ANIMAL LECTINS
Authors
:
A. R. Kolatkar, W. I. Weis
Date
:
03 Nov 95 (Deposition) - 03 Apr 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : 1,2,3
Biol. Unit 1: 1,2,3 (1x)
Keywords
:
C-Type Lectin, Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. R. Kolatkar, W. I. Weis
Structural Basis Of Galactose Recognition By C-Type Animal Lectins.
J. Biol. Chem. V. 271 6679 1996
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
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Sites
(18, 18)
Info
All Sites
01: 11 (UNKNOWN)
02: 11_01 (UNKNOWN)
03: 12 (UNKNOWN)
04: 12_02 (UNKNOWN)
05: 13 (UNKNOWN)
06: 13_03 (UNKNOWN)
07: 21 (UNKNOWN)
08: 22 (UNKNOWN)
09: 23 (UNKNOWN)
10: 31 (UNKNOWN)
11: 33 (UNKNOWN)
12: AC1 (SOFTWARE)
13: AC2 (SOFTWARE)
14: AC6 (SOFTWARE)
15: AC7 (SOFTWARE)
16: AC8 (SOFTWARE)
17: AC9 (SOFTWARE)
18: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
11
UNKNOWN
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:1 , HOH 1:237
NULL
02
11_01
UNKNOWN
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:1 , HOH 1:237
NULL
03
12
UNKNOWN
ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1 , HOH 2:245
NULL
04
12_02
UNKNOWN
ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1 , HOH 2:245
NULL
05
13
UNKNOWN
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , CA 3:1 , HOH 3:231
NULL
06
13_03
UNKNOWN
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , CA 3:1 , HOH 3:231
NULL
07
21
UNKNOWN
GLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , CA 1:2 , HOH 1:355
NULL
08
22
UNKNOWN
GLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211 , CA 2:2
NULL
09
23
UNKNOWN
GLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211 , CA 3:2 , HOH 3:323
NULL
10
31
UNKNOWN
GLU 1:84 , CA 1:3 , HOH 1:288 , HOH 1:350
NULL
11
33
UNKNOWN
GLU 3:84 , CA 3:3 , HOH 1:248 , HOH 3:257 , HOH 3:266
NULL
12
AC1
SOFTWARE
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , HOH 1:237
BINDING SITE FOR RESIDUE CA 1 1
13
AC2
SOFTWARE
GLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , HOH 1:355
BINDING SITE FOR RESIDUE CA 1 2
14
AC6
SOFTWARE
GLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211
BINDING SITE FOR RESIDUE CA 2 2
15
AC7
SOFTWARE
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , HOH 3:231
BINDING SITE FOR RESIDUE CA 3 1
16
AC8
SOFTWARE
GLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211
BINDING SITE FOR RESIDUE CA 3 2
17
AC9
SOFTWARE
HOH 1:248 , GLU 3:84 , GLU 3:165 , ASP 3:199 , HOH 3:257 , HOH 3:266
BINDING SITE FOR RESIDUE CA 3 3
18
BC1
SOFTWARE
ASP 3:199 , SER 3:213 , CYS 3:214 , HOH 3:252 , HOH 3:269
BINDING SITE FOR RESIDUE CL 3 4
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL1_RAT
123-235
3
1:106-223
2:106-223
3:106-223
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL1_RAT
212-234
3
1:200-222
2:200-222
3:200-222
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1afd11 (1:105-226)
1b: SCOP_d1afd21 (2:105-226)
1c: SCOP_d1afd31 (3:105-226)
2a: SCOP_d1afd12 (1:73-104)
2b: SCOP_d1afd22 (2:73-104)
2c: SCOP_d1afd32 (3:73-104)
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Classes
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)
(
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Folds
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(
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d1afd11
1:105-226
1b
d1afd21
2:105-226
1c
d1afd31
3:105-226
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(22)
2a
d1afd12
1:73-104
2b
d1afd22
2:73-104
2c
d1afd32
3:73-104
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1afd100 (1:73-226)
1b: CATH_1afd200 (2:73-226)
1c: CATH_1afd300 (3:73-226)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1afd100
1:73-226
1b
1afd200
2:73-226
1c
1afd300
3:73-226
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain 1
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Chain 3
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (86 KB)
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