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1AFB
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
STRUCTURAL BASIS OF GALACTOSE RECOGNITION IN C-TYPE ANIMAL LECTINS
Authors
:
A. R. Kolatkar, W. I. Weis
Date
:
03 Nov 95 (Deposition) - 03 Apr 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : 1,2,3
Biol. Unit 1: 1,2,3 (1x)
Keywords
:
C-Type Lectin, Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. R. Kolatkar, W. I. Weis
Structural Basis Of Galactose Recognition By C-Type Animal Lectins.
J. Biol. Chem. V. 271 6679 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: N-ACETYL-D-GALACTOSAMINE (NGAa)
3b: N-ACETYL-D-GALACTOSAMINE (NGAb)
3c: N-ACETYL-D-GALACTOSAMINE (NGAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
9
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
NGA
3
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
[
close Hetero Component info
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Sites
(23, 23)
Info
All Sites
01: 11 (UNKNOWN)
02: 11_01 (UNKNOWN)
03: 12 (UNKNOWN)
04: 12_02 (UNKNOWN)
05: 13 (UNKNOWN)
06: 13_03 (UNKNOWN)
07: 21 (UNKNOWN)
08: 21_04 (UNKNOWN)
09: 22 (UNKNOWN)
10: 22_05 (UNKNOWN)
11: 23 (UNKNOWN)
12: 23_06 (UNKNOWN)
13: 31 (UNKNOWN)
14: 32 (UNKNOWN)
15: 33 (UNKNOWN)
16: AC1 (SOFTWARE)
17: AC5 (SOFTWARE)
18: AC6 (SOFTWARE)
19: AC7 (SOFTWARE)
20: AC8 (SOFTWARE)
21: AC9 (SOFTWARE)
22: BC1 (SOFTWARE)
23: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
11
UNKNOWN
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:227 , HOH 1:261
NULL
02
11_01
UNKNOWN
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:227 , HOH 1:261
NULL
03
12
UNKNOWN
ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1
NULL
04
12_02
UNKNOWN
ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1
NULL
05
13
UNKNOWN
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLY 3:193 , LEU 3:194 , CA 3:1 , HOH 3:259
NULL
06
13_03
UNKNOWN
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLY 3:193 , LEU 3:194 , CA 3:1 , HOH 3:259
NULL
07
21
UNKNOWN
GLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , CA 1:2 , NGA 1:1
NULL
08
21_04
UNKNOWN
GLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , CA 1:2 , NGA 1:1
NULL
09
22
UNKNOWN
GLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211 , CA 2:227 , NGA 2:2
NULL
10
22_05
UNKNOWN
GLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211 , CA 2:227 , NGA 2:2
NULL
11
23
UNKNOWN
GLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211 , CA 3:2 , NGA 3:3
NULL
12
23_06
UNKNOWN
GLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211 , CA 3:2 , NGA 3:3
NULL
13
31
UNKNOWN
GLU 1:84 , CA 1:3 , HOH 1:261
NULL
14
32
UNKNOWN
GLU 2:165 , ASP 2:199 , CA 2:3 , HOH 2:303 , HOH 2:304
NULL
15
33
UNKNOWN
GLU 3:84 , CA 3:227 , HOH 3:228 , HOH 1:250 , HOH 3:335
NULL
16
AC1
SOFTWARE
CA 1:2 , GLN 1:185 , ASP 1:187 , TRP 1:189 , GLU 1:198 , ASN 1:210 , ASP 1:211 , HOH 1:332
BINDING SITE FOR RESIDUE NGA 1 1
17
AC5
SOFTWARE
NGA 1:1 , GLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211
BINDING SITE FOR RESIDUE CA 1 2
18
AC6
SOFTWARE
GLU 1:84 , GLU 1:165 , ASP 1:199 , HOH 1:229 , HOH 1:273 , HOH 1:297
BINDING SITE FOR RESIDUE CA 1 3
19
AC7
SOFTWARE
ASP 1:199 , CYS 1:214 , GLN 1:215 , HOH 1:269 , HOH 1:275
BINDING SITE FOR RESIDUE CL 1 4
20
AC8
SOFTWARE
HOH 1:279 , ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199
BINDING SITE FOR RESIDUE CA 2 1
21
AC9
SOFTWARE
NGA 2:2 , GLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211
BINDING SITE FOR RESIDUE CA 2 227
22
BC1
SOFTWARE
GLU 2:165 , ASP 2:199 , HOH 2:303 , HOH 2:304
BINDING SITE FOR RESIDUE CA 2 3
23
BC2
SOFTWARE
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , HOH 3:259
BINDING SITE FOR RESIDUE CA 3 1
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (1:106-223,2:106-223,3:106-223)
2: C_TYPE_LECTIN_1 (1:200-222,2:200-222,3:200-222)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL1_RAT
123-235
3
1:106-223
2:106-223
3:106-223
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL1_RAT
212-234
3
1:200-222
2:200-222
3:200-222
[
close PROSITE info
]
Exons
(3, 9)
Info
All Exons
Exon 1.3 (1:73-73 | 2:73-73 | 3:73-73)
Exon 1.4 (1:73-98 | 2:73-98 | 3:73-98)
Exon 1.5 (1:98-226 | 2:98-226 | 3:98-226)
View:
Select:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015723
1
ENSRNOE00000411163
chr16:
17591820-17591881
62
MBL1_RAT
-
0
0
-
-
1.2
ENSRNOT00000015723
2
ENSRNOE00000110617
chr16:
17593783-17593943
161
MBL1_RAT
1-51
51
0
-
-
1.3
ENSRNOT00000015723
3
ENSRNOE00000110943
chr16:
17594301-17594417
117
MBL1_RAT
51-90
40
3
1:73-73
2:73-73
3:73-73
1
1
1
1.4
ENSRNOT00000015723
4
ENSRNOE00000111237
chr16:
17596168-17596242
75
MBL1_RAT
90-115
26
3
1:73-98
2:73-98
3:73-98
26
26
26
1.5
ENSRNOT00000015723
5
ENSRNOE00000111555
chr16:
17597083-17597859
777
MBL1_RAT
115-238
124
3
1:98-226
2:98-226
3:98-226
129
129
129
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1afb11 (1:105-226)
1b: SCOP_d1afb21 (2:105-226)
1c: SCOP_d1afb31 (3:105-226)
2a: SCOP_d1afb12 (1:73-104)
2b: SCOP_d1afb22 (2:73-104)
2c: SCOP_d1afb32 (3:73-104)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d1afb11
1:105-226
1b
d1afb21
2:105-226
1c
d1afb31
3:105-226
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(22)
2a
d1afb12
1:73-104
2b
d1afb22
2:73-104
2c
d1afb32
3:73-104
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1afb100 (1:73-226)
1b: CATH_1afb200 (2:73-226)
1c: CATH_1afb300 (3:73-226)
View:
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1afb100
1:73-226
1b
1afb200
2:73-226
1c
1afb300
3:73-226
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain 1
Chain 2
Chain 3
Asymmetric Unit 1
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