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1AF0
Asym. Unit
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Asym.Unit (121 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
SERRATIA PROTEASE IN COMPLEX WITH INHIBITOR
Authors
:
U. Baumann
Date
:
20 Mar 97 (Deposition) - 25 Mar 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metalloprotease, Serralysin, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Baumann
Crystal Structure Of The 50 Kda Metallo Protease From S. Marcescens In Complex With The Synthetic Inhibitor Cbz-Leu-Ala-Nhoh
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N... (0Z9a)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
3a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0Z9
1
Ligand/Ion
N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-HYDROXY-L-ALANINAMIDE
2
CA
7
Ligand/Ion
CALCIUM ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACT (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:176 , HIS A:180 , HIS A:186 , 0Z9 A:674
BINDING SITE FOR RESIDUE ZN A 472
02
AC2
SOFTWARE
ARG A:253 , GLY A:255 , THR A:257 , ASP A:285 , GLY A:287 , ASP A:290
BINDING SITE FOR RESIDUE CA A 474
03
AC3
SOFTWARE
GLY A:288 , ASP A:290 , THR A:327 , GLU A:329 , HOH A:2057 , HOH A:2059
BINDING SITE FOR RESIDUE CA A 476
04
AC4
SOFTWARE
GLY A:334 , GLY A:336 , ASP A:338 , GLY A:351 , ALA A:353 , ASP A:356
BINDING SITE FOR RESIDUE CA A 478
05
AC5
SOFTWARE
ASN A:343 , ALA A:345 , ASN A:347 , GLY A:360 , GLY A:362 , ASP A:365
BINDING SITE FOR RESIDUE CA A 480
06
AC6
SOFTWARE
GLY A:352 , GLY A:354 , ASP A:356 , GLY A:369 , ALA A:371 , ASP A:374
BINDING SITE FOR RESIDUE CA A 482
07
AC7
SOFTWARE
GLY A:370 , GLY A:372 , ASP A:374 , ASP A:400 , HOH A:2081 , HOH A:2141
BINDING SITE FOR RESIDUE CA A 484
08
AC8
SOFTWARE
GLY A:361 , GLY A:362 , GLY A:363 , ASP A:365 , ASP A:383 , ASP A:390 , HOH A:2076
BINDING SITE FOR RESIDUE CA A 486
09
AC9
SOFTWARE
ALA A:134 , TYR A:135 , ALA A:136 , LEU A:138 , HIS A:176 , GLU A:177 , HIS A:180 , HIS A:186 , ASN A:191 , ALA A:192 , TYR A:216 , ZN A:472
BINDING SITE FOR RESIDUE 0Z9 A 674
10
ACT
AUTHOR
HIS A:176 , GLU A:177 , HIS A:180 , HIS A:186
ACTIVE SITE, HISTIDINES ARE ZINC LIGANDS AND E 177 THE PUTATIVE CATALYTIC BASE. TYR 216 IS INVOLVED IN LIGAND BINDING.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:173-182)
2: HEMOLYSIN_CALCIUM (A:356-374)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
PRZN_SERMA
189-198
1
A:173-182
2
HEMOLYSIN_CALCIUM
PS00330
Hemolysin-type calcium-binding region signature.
PRZN_SERMA
372-390
1
A:356-374
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1af0a1 (A:247-471)
2a: SCOP_d1af0a2 (A:2-246)
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Classes
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
beta-Roll
(25)
Family
:
Serralysin-like metalloprotease, C-terminal domain
(24)
Protein domain
:
Metalloprotease
(24)
Serratia marcescens [TaxId: 615]
(4)
1a
d1af0a1
A:247-471
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Serralysin-like metalloprotease, catalytic (N-terminal) domain
(25)
Protein domain
:
Metalloprotease
(24)
Serratia marcescens [TaxId: 615]
(4)
2a
d1af0a2
A:2-246
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1af0A02 (A:18-249)
2a: CATH_1af0A01 (A:4-17,A:250-471)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Serratia marcescens. Organism_taxid: 615. Strain: not known, probablysm6.
(1)
1a
1af0A02
A:18-249
Class
:
Mainly Beta
(13760)
Architecture
:
2 Solenoid
(23)
Topology
:
Alkaline Protease, subunit P, domain 1
(23)
Homologous Superfamily
:
Alkaline Protease, subunit P, domain 1
(23)
Serratia marcescens. Organism_taxid: 615. Strain: not known, probablysm6.
(1)
2a
1af0A01
A:4-17,A:250-471
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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