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1AEW
Biol. Unit 1
Info
Asym.Unit (37 KB)
Biol.Unit 1 (687 KB)
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(1)
Title
:
L-CHAIN HORSE APOFERRITIN
Authors
:
P. D. Hempstead, S. J. Yewdall, D. M. Lawson, P. M. Harrison, P. J. Artymi
Date
:
26 Feb 97 (Deposition) - 04 Sep 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
Iron Storage, Multigene Family
(Keyword Search:
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Reference
:
P. D. Hempstead, S. J. Yewdall, A. R. Fernie, D. M. Lawson, P. J. Artymiuk, D. W. Rice, G. C. Ford, P. M. Harrison
Comparison Of The Three-Dimensional Structures Of Recombinant Human H And Horse L Ferritins At High Resolution.
J. Mol. Biol. V. 268 424 1997
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: NCL (UNKNOWN)
08: SS1 (UNKNOWN)
09: SS2 (UNKNOWN)
10: SS3 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:84 , GLN A:86 , HOH A:410
BINDING SITE FOR RESIDUE CD A 185
02
AC2
SOFTWARE
ASP A:131 , SER A:135
BINDING SITE FOR RESIDUE CD A 186
03
AC3
SOFTWARE
ASP A:42 , GLU A:49 , CYS A:52
BINDING SITE FOR RESIDUE CD A 187
04
AC4
SOFTWARE
GLU A:134 , HOH A:358
BINDING SITE FOR RESIDUE CD A 188
05
AC5
SOFTWARE
HIS A:118 , CYS A:130 , GLU A:134
BINDING SITE FOR RESIDUE CD A 189
06
AC6
SOFTWARE
HIS A:136 , ASP A:139
BINDING SITE FOR RESIDUE CD A 190
07
NCL
UNKNOWN
GLU A:57 , GLU A:60 , GLU A:61 , GLU A:64
PUTATIVE IRON CORE NUCLEATION SITE IN FERRITINS.
08
SS1
UNKNOWN
CD A:185
INTERMOLECULAR CRYSTAL CONTACT. THIS CADMIUM BRIDGE LINKS 2 SUBUNITS OF NEIGHBORING MOLECULES.
09
SS2
UNKNOWN
CD A:186 , CD A:188 , CD A:189
THESE CADMIUM ATOMS ARE OBSERVED ON OR NEAR THE CRYSTALLOGRAPHIC THREE-FOLD AXIS. RESIDUE 186 IS LOCATED ON THE AXIS AND THUS HAS AN OCCUPANCY OF 1/3. THE OTHER METAL IONS EXHIBIT DISORDER, WITH THE SITES BEING OCCUPIED ONE THIRD BY METAL AND TWO THIRDS BY WATER MOLECULES.
10
SS3
UNKNOWN
CD A:187
METAL BINDING SITE ON THE INNER SURFACE OF THE PROTEIN SHELL. THIS MAY NOT BE FUNCTIONALLY SIGNIFICANT SINCE THE LIGANDS OF THIS SITE (ASP 42, GLU 49, AND CYS 52) ARE NOT CONSERVED ACROSS THE FERRITINS.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:10-159)
2: FERRITIN_1 (A:61-79)
3: FERRITIN_2 (A:126-146)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
24
A:10-159
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
24
A:61-79
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
24
A:126-146
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1aewa_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Horse (Equus caballus), L chain [TaxId: 9796]
(46)
1a
d1aewa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1aewA00 (A:6-175)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Horse (Equus caballus)
(31)
1a
1aewA00
A:6-175
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Pfam Domains
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
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Asymmetric Unit 16
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Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
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Asym.Unit (37 KB)
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