PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1AEI
Asym. Unit
Info
Asym.Unit (359 KB)
Biol.Unit 1 (351 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE ANNEXIN XII HEXAMER
Authors
:
H. Luecke, B. T. Chang, W. S. Mailliard, D. D. Schlaepfer, H. T. Haigler
Date
:
23 Sep 95 (Deposition) - 20 Aug 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Calcium/Phospholipid-Binding, Annexin, Calcium, Phospholipid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Luecke, B. T. Chang, W. S. Mailliard, D. D. Schlaepfer, H. T. Haigler
Crystal Structure Of The Annexin Xii Hexamer And Implications For Bilayer Insertion.
Nature V. 378 512 1995
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
24
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:105 , LYS E:68 , LEU E:71 , GLU E:76
BINDING SITE FOR RESIDUE CA E 1
02
AC2
SOFTWARE
GLU B:105 , LYS D:68 , LEU D:71 , GLU D:76
BINDING SITE FOR RESIDUE CA D 317
03
AC3
SOFTWARE
GLU C:105 , LYS F:68 , LEU F:71 , GLU F:76
BINDING SITE FOR RESIDUE CA F 317
04
AC4
SOFTWARE
LYS B:68 , LEU B:71 , GLU B:76 , GLU D:105
BINDING SITE FOR RESIDUE CA B 317
05
AC5
SOFTWARE
LYS A:68 , LEU A:71 , GLU A:76 , GLU E:105
BINDING SITE FOR RESIDUE CA A 317
06
AC6
SOFTWARE
LYS C:68 , LEU C:71 , GLU C:76 , GLU F:105
BINDING SITE FOR RESIDUE CA C 317
07
AC7
SOFTWARE
MET A:26 , GLY A:28 , GLY A:30 , GLU A:70
BINDING SITE FOR RESIDUE CA A 318
08
AC8
SOFTWARE
MET B:26 , GLY B:28 , GLY B:30 , GLU B:70
BINDING SITE FOR RESIDUE CA B 318
09
AC9
SOFTWARE
MET C:26 , GLY C:28 , GLY C:30 , GLU C:70
BINDING SITE FOR RESIDUE CA C 318
10
BC1
SOFTWARE
MET D:26 , GLY D:28 , GLY D:30 , GLU D:70
BINDING SITE FOR RESIDUE CA D 318
11
BC2
SOFTWARE
MET E:26 , GLY E:28 , GLY E:30 , GLU E:70
BINDING SITE FOR RESIDUE CA E 317
12
BC3
SOFTWARE
MET F:26 , GLY F:28 , GLY F:30 , GLU F:70
BINDING SITE FOR RESIDUE CA F 318
13
BC4
SOFTWARE
GLY A:181 , GLN A:184 , ILE A:185 , GLY A:186 , GLU A:226
BINDING SITE FOR RESIDUE CA A 319
14
BC5
SOFTWARE
GLY B:181 , GLN B:184 , ILE B:185 , GLY B:186 , GLU B:226
BINDING SITE FOR RESIDUE CA B 319
15
BC6
SOFTWARE
GLY C:181 , GLN C:184 , ILE C:185 , GLY C:186 , GLU C:226
BINDING SITE FOR RESIDUE CA C 319
16
BC7
SOFTWARE
GLY D:181 , GLN D:184 , ILE D:185 , GLY D:186 , GLU D:226
BINDING SITE FOR RESIDUE CA D 319
17
BC8
SOFTWARE
GLY E:181 , GLN E:184 , ILE E:185 , GLY E:186 , GLU E:226
BINDING SITE FOR RESIDUE CA E 318
18
BC9
SOFTWARE
GLY F:181 , GLN F:184 , ILE F:185 , GLY F:186 , GLU F:226
BINDING SITE FOR RESIDUE CA F 319
19
CC1
SOFTWARE
MET A:257 , LYS A:258 , GLY A:259 , GLY A:261 , ASP A:301
BINDING SITE FOR RESIDUE CA A 320
20
CC2
SOFTWARE
MET B:257 , LYS B:258 , GLY B:259 , GLY B:261 , ASP B:301
BINDING SITE FOR RESIDUE CA B 320
21
CC3
SOFTWARE
MET C:257 , GLY C:259 , GLY C:261 , ASP C:301
BINDING SITE FOR RESIDUE CA C 320
22
CC4
SOFTWARE
MET D:257 , LYS D:258 , GLY D:259 , GLY D:261 , ASP D:301
BINDING SITE FOR RESIDUE CA D 320
23
CC5
SOFTWARE
MET E:257 , LYS E:258 , GLY E:259 , GLY E:261 , ASP E:301
BINDING SITE FOR RESIDUE CA E 319
24
CC6
SOFTWARE
MET F:257 , LYS F:258 , GLY F:259 , GLY F:261 , ASP F:301
BINDING SITE FOR RESIDUE CA F 320
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:30-82,B:30-82,C:30-82,D:30-82,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANX12_HYDVU
30-82
186-238
261-313
18
A:30-82
B:30-82
C:30-82
D:30-82
E:30-82
F:30-82
A:186-238
B:186-238
C:186-238
D:186-238
E:186-238
F:186-238
A:261-313
B:261-313
C:261-313
D:261-313
E:261-313
F:261-313
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1aeia_ (A:)
1b: SCOP_d1aeib_ (B:)
1c: SCOP_d1aeic_ (C:)
1d: SCOP_d1aeid_ (D:)
1e: SCOP_d1aeie_ (E:)
1f: SCOP_d1aeif_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin XII
(2)
Hydra (Hydra attenuata) [TaxId: 6087]
(1)
1a
d1aeia_
A:
1b
d1aeib_
B:
1c
d1aeic_
C:
1d
d1aeid_
D:
1e
d1aeie_
E:
1f
d1aeif_
F:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1aeiA01 (A:12-84)
1b: CATH_1aeiB01 (B:12-84)
1c: CATH_1aeiE04 (E:245-316)
1d: CATH_1aeiF04 (F:245-316)
1e: CATH_1aeiA02 (A:85-158)
1f: CATH_1aeiB02 (B:85-158)
1g: CATH_1aeiC02 (C:85-158)
1h: CATH_1aeiD02 (D:85-158)
1i: CATH_1aeiE02 (E:85-158)
1j: CATH_1aeiF02 (F:85-158)
1k: CATH_1aeiA03 (A:159-244)
1l: CATH_1aeiB03 (B:159-244)
1m: CATH_1aeiC01 (C:12-84)
1n: CATH_1aeiC03 (C:159-244)
1o: CATH_1aeiD03 (D:159-244)
1p: CATH_1aeiE03 (E:159-244)
1q: CATH_1aeiF03 (F:159-244)
1r: CATH_1aeiD01 (D:12-84)
1s: CATH_1aeiE01 (E:12-84)
1t: CATH_1aeiF01 (F:12-84)
1u: CATH_1aeiA04 (A:245-316)
1v: CATH_1aeiB04 (B:245-316)
1w: CATH_1aeiC04 (C:245-316)
1x: CATH_1aeiD04 (D:245-316)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Hydra vulgaris. Organism_taxid: 6087.
(1)
1a
1aeiA01
A:12-84
1b
1aeiB01
B:12-84
1c
1aeiE04
E:245-316
1d
1aeiF04
F:245-316
1e
1aeiA02
A:85-158
1f
1aeiB02
B:85-158
1g
1aeiC02
C:85-158
1h
1aeiD02
D:85-158
1i
1aeiE02
E:85-158
1j
1aeiF02
F:85-158
1k
1aeiA03
A:159-244
1l
1aeiB03
B:159-244
1m
1aeiC01
C:12-84
1n
1aeiC03
C:159-244
1o
1aeiD03
D:159-244
1p
1aeiE03
E:159-244
1q
1aeiF03
F:159-244
1r
1aeiD01
D:12-84
1s
1aeiE01
E:12-84
1t
1aeiF01
F:12-84
1u
1aeiA04
A:245-316
1v
1aeiB04
B:245-316
1w
1aeiC04
C:245-316
1x
1aeiD04
D:245-316
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (359 KB)
Header - Asym.Unit
Biol.Unit 1 (351 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1AEI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help