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1AE5
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
HUMAN HEPARIN BINDING PROTEIN
Authors
:
L. F. Iversen, J. S. Kastrup, S. E. Bjorn, P. B. Rasmussen, F. C. Wiberg, H. J. Flodgaard, I. K. Larsen
Date
:
05 Mar 97 (Deposition) - 11 Mar 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Protease Homolog, Endotoxin Binding, Heparin Binding, Inflammation, Antibacterial, Cap37, Azurocidin, Glycosylated Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. F. Iversen, J. S. Kastrup, S. E. Bjorn, P. B. Rasmussen, F. C. Wiberg, H. J. Flodgaard, I. K. Larsen
Structure Of Hbp, A Multifunctional Protein With A Serine Proteinase Fold.
Nat. Struct. Biol. V. 4 265 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:10 , SER A:103 , ASN A:114
BINDING SITE FOR RESIDUE NAG A 401
2
AC2
SOFTWARE
ARG A:5 , PHE A:143 , ASN A:145 , HOH A:441
BINDING SITE FOR RESIDUE NAG A 411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:1-218)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CAP7_HUMAN
27-244
1
A:1-218
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Exons
(4, 4)
Info
All Exons
Exon 1.3 (A:1-45)
Exon 1.4 (A:48-94)
Exon 1.5a (A:95-172)
Exon 1.5c (A:173-225)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.5c
5: Boundary 1.5c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000233997
2
ENSE00001236585
chr19:
827831-827904
74
CAP7_HUMAN
1-20
20
0
-
-
1.3
ENST00000233997
3
ENSE00001236572
chr19:
828230-828386
157
CAP7_HUMAN
20-72
53
1
A:1-45
45
1.4
ENST00000233997
4
ENSE00001236566
chr19:
829562-829706
145
CAP7_HUMAN
72-120
49
1
A:48-94
47
1.5a
ENST00000233997
5a
ENSE00001332741
chr19:
830708-830941
234
CAP7_HUMAN
121-198
78
1
A:95-172
78
1.5c
ENST00000233997
5c
ENSE00001154873
chr19:
831716-832017
302
CAP7_HUMAN
199-251
53
1
A:173-225
53
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ae5a_ (A:)
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Classes
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)
(
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)
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Heparin binding protein, HBP
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1ae5a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ae5A01 (A:1-12,A:108-207)
1b: CATH_1ae5A02 (A:13-107,A:208-221)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1ae5A01
A:1-12,A:108-207
1b
1ae5A02
A:13-107,A:208-221
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (41 KB)
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