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1AD3
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
CLASS 3 ALDEHYDE DEHYDROGENASE COMPLEX WITH NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors
:
Z. -J. Liu, J. Rose, B. C. Wang
Date
:
25 Jun 96 (Deposition) - 07 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nadp, Oxidoreductase, Aromatic Aldehyde
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. J. Liu, Y. J. Sun, J. Rose, Y. J. Chung, C. D. Hsiao, W. R. Chang, I. Kuo, J. Perozich, R. Lindahl, J. Hempel, B. C. Wang
The First Structure Of An Aldehyde Dehydrogenase Reveals Novel Interactions Between Nad And The Rossmann Fold.
Nat. Struct. Biol. V. 4 317 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: CTA (UNKNOWN)
4: CTB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:112 , TRP A:113 , ASN A:114 , GLU A:140 , VAL A:141 , GLY A:168 , VAL A:169 , GLY A:187 , VAL A:191 , ILE A:194 , HIS A:289 , ARG A:292 , GLU A:333 , PHE A:335 , HOH A:606 , HOH A:617
BINDING SITE FOR RESIDUE NAD A 600
2
AC2
SOFTWARE
ALA B:112 , TRP B:113 , ASN B:114 , GLU B:140 , VAL B:141 , GLY B:168 , VAL B:169 , VAL B:191 , HIS B:289 , ARG B:292 , GLU B:333 , PHE B:335
BINDING SITE FOR RESIDUE NAD B 600
3
CTA
UNKNOWN
CYS A:216
CATALYTIC CYSTEINE
4
CTB
UNKNOWN
CYS B:216
CATALYTIC CYSTEINE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:208-215,B:208-215)
2: ALDEHYDE_DEHYDR_CYS (A:236-247,B:236-247)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL3A1_RAT
209-216
2
A:208-215
B:208-215
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL3A1_RAT
237-248
2
A:236-247
B:236-247
[
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Exons
(9, 18)
Info
All Exons
Exon 1.2 (A:2-53 | B:2-53)
Exon 1.3 (A:54-131 | B:54-131)
Exon 1.4 (A:131-159 | B:131-159)
Exon 1.5 (A:160-229 | B:160-229)
Exon 1.6 (A:229-268 | B:229-268)
Exon 1.7 (A:269-316 | B:269-316)
Exon 1.8 (A:316-371 | B:316-371)
Exon 1.9 (A:372-405 | B:372-405)
Exon 1.10 (A:405-447 | B:405-447)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000003182
1
ENSRNOE00000022429
chr10:
47365155-47365355
201
AL3A1_RAT
-
0
0
-
-
1.2
ENSRNOT00000003182
2
ENSRNOE00000022432
chr10:
47368559-47368725
167
AL3A1_RAT
1-54
54
2
A:2-53
B:2-53
52
52
1.3
ENSRNOT00000003182
3
ENSRNOE00000022444
chr10:
47369936-47370167
232
AL3A1_RAT
55-132
78
2
A:54-131
B:54-131
78
78
1.4
ENSRNOT00000003182
4
ENSRNOE00000022454
chr10:
47370656-47370741
86
AL3A1_RAT
132-160
29
2
A:131-159
B:131-159
29
29
1.5
ENSRNOT00000003182
5
ENSRNOE00000343419
chr10:
47370990-47371198
209
AL3A1_RAT
161-230
70
2
A:160-229
B:160-229
70
70
1.6
ENSRNOT00000003182
6
ENSRNOE00000022470
chr10:
47371922-47372039
118
AL3A1_RAT
230-269
40
2
A:229-268
B:229-268
40
40
1.7
ENSRNOT00000003182
7
ENSRNOE00000022477
chr10:
47372769-47372910
142
AL3A1_RAT
270-317
48
2
A:269-316
B:269-316
48
48
1.8
ENSRNOT00000003182
8
ENSRNOE00000022489
chr10:
47373563-47373729
167
AL3A1_RAT
317-372
56
2
A:316-371
B:316-371
56
56
1.9
ENSRNOT00000003182
9
ENSRNOE00000022500
chr10:
47374138-47374237
100
AL3A1_RAT
373-406
34
2
A:372-405
B:372-405
34
34
1.10
ENSRNOT00000003182
10
ENSRNOE00000022511
chr10:
47374455-47374585
131
AL3A1_RAT
406-449
44
2
A:405-447
B:405-447
43
43
1.11
ENSRNOT00000003182
11
ENSRNOE00000022524
chr10:
47374679-47374873
195
AL3A1_RAT
450-453
4
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ad3a_ (A:)
1b: SCOP_d1ad3b_ (B:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1ad3a_
A:
1b
d1ad3b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ad3A01 (A:3-210,A:408-446)
1b: CATH_1ad3B01 (B:3-210,B:408-446)
2a: CATH_1ad3A02 (A:213-407)
2b: CATH_1ad3B02 (B:213-407)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Norway rat (Rattus norvegicus)
(5)
1a
1ad3A01
A:3-210,A:408-446
1b
1ad3B01
B:3-210,B:408-446
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Norway rat (Rattus norvegicus)
(5)
2a
1ad3A02
A:213-407
2b
1ad3B02
B:213-407
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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