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1AC4
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2,3,4-TRIMETHYL-1,3-THIAZOLE)
Authors
:
R. A. Musah, G. M. Jensen, S. W. Bunte, R. Rosenfeld, D. E. Mcree, D. B. Goodin
Date
:
12 Feb 97 (Deposition) - 04 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Peroxidase, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. M. Fitzgerald, R. A. Musah, D. E. Mcree, D. B. Goodin
Variation In Strength Of An Unconventional C-H To O Hydrogen Bond In An Engineered Protein Cavity
J. Am. Chem. Soc. V. 119 626 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: 2,3,4-TRIMETHYL-1,3-THIAZOLE (TMTa)
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No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
TMT
1
Ligand/Ion
2,3,4-TRIMETHYL-1,3-THIAZOLE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: ACT (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:44 , VAL A:47 , TRP A:51 , PRO A:145 , ASP A:146 , LEU A:171 , ALA A:174 , HIS A:175 , LEU A:177 , GLY A:178 , LYS A:179 , HIS A:181 , ASN A:184 , SER A:185 , TMT A:296 , HOH A:302 , HOH A:311 , HOH A:313 , HOH A:314
BINDING SITE FOR RESIDUE HEM A 295
2
AC2
SOFTWARE
HIS A:175 , LYS A:179 , THR A:180 , GLY A:191 , MET A:230 , LEU A:232 , ASP A:235 , HEM A:295 , HOH A:308
BINDING SITE FOR RESIDUE TMT A 296
3
ACT
UNKNOWN
ARG A:48 , TRP A:51 , HIS A:52
REMOVAL OF TRP 191 FORMS AN INTERNAL CAVITY BELOW THE HEME RELATIVE TO THE ACTIVE SITE.
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CCPR_YEAST_001 (I53I, chain A, )
2: VAR_CCPR_YEAST_002 (G152G, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CCPR_YEAST_001
*
T
120
I
CCPR_YEAST
---
---
A
I
53
I
2
UniProt
VAR_CCPR_YEAST_002
*
D
219
G
CCPR_YEAST
---
---
A
G
152
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:43-54)
2: PEROXIDASE_1 (A:167-177)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
CCPR_YEAST
110-121
1
A:43-54
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
CCPR_YEAST
234-244
1
A:167-177
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:4-294)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YKR066C
1
YKR066C.1
XI:566840-565755
1086
CCPR_YEAST
1-361
361
1
A:4-294
291
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ac4a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Cytochrome c peroxidase, CCP
(170)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(170)
1a
d1ac4a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ac4A01 (A:4-144,A:266-294)
2a: CATH_1ac4A02 (A:145-265)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Baker's yeast (Saccharomyces cerevisiae)
(120)
1a
1ac4A01
A:4-144,A:266-294
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Baker's yeast (Saccharomyces cerevisiae)
(120)
2a
1ac4A02
A:145-265
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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