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1A9B
Biol. Unit 1
Info
Asym.Unit (116 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
DECAMER-LIKE CONFORMATION OF A NANO-PEPTIDE BOUND TO HLA-B3501 DUE TO NONSTANDARD POSITIONING OF THE C-TERMINUS
Authors
:
R. Menssen, P. Orth, A. Ziegler, W. Saenger
Date
:
03 Apr 98 (Deposition) - 21 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Mhc Class I, Histocompatibility Complex, Hla B3501, Complex (Mhc Class I/Peptide)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Menssen, P. Orth, A. Ziegler, W. Saenger
Decamer-Like Conformation Of A Nona-Peptide Bound To Hla-B*3501 Due To Non-Standard Positioning Of The C Terminus.
J. Mol. Biol. V. 285 645 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_016393 (G16V, chain A, )
02: VAR_016394 (A24S, chain A, )
03: VAR_016395 (T45E, chain A, )
04: VAR_016396 (N63E, chain A, )
05: VAR_016397 (F67S, chain A, )
06: VAR_016398 (Y74D, chain A, )
07: VAR_016399 (G83D, chain A, )
08: VAR_016401 (R97S, chain A, )
09: VAR_016402 (L103V, chain A, )
10: VAR_016403 (L109F, chain A, )
11: VAR_016404 (D114N, chain A, )
12: VAR_016405 (S116F, chain A, )
13: VAR_016406 (S116Y, chain A, )
14: VAR_016407 (L156R, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016393
G
40
V
1B35_HUMAN
Polymorphism
---
A
G
16
V
02
UniProt
VAR_016394
A
48
S
1B35_HUMAN
Polymorphism
---
A
A
24
S
03
UniProt
VAR_016395
T
69
E
1B35_HUMAN
Polymorphism
---
A
T
45
E
04
UniProt
VAR_016396
N
87
E
1B35_HUMAN
Polymorphism
---
A
N
63
E
05
UniProt
VAR_016397
F
91
S
1B35_HUMAN
Polymorphism
---
A
F
67
S
06
UniProt
VAR_016398
Y
98
D
1B35_HUMAN
Polymorphism
---
A
Y
74
D
07
UniProt
VAR_016399
G
107
D
1B35_HUMAN
Polymorphism
---
A
G
83
D
08
UniProt
VAR_016401
R
121
S
1B35_HUMAN
Polymorphism
---
A
R
97
S
09
UniProt
VAR_016402
L
127
V
1B35_HUMAN
Polymorphism
---
A
L
103
V
10
UniProt
VAR_016403
L
133
F
1B35_HUMAN
Polymorphism
---
A
L
109
F
11
UniProt
VAR_016404
D
138
N
1B35_HUMAN
Polymorphism
---
A
D
114
N
12
UniProt
VAR_016405
S
140
F
1B35_HUMAN
Polymorphism
---
A
S
116
F
13
UniProt
VAR_016406
S
140
Y
1B35_HUMAN
Polymorphism
---
A
S
116
Y
14
UniProt
VAR_016407
L
180
R
1B35_HUMAN
Polymorphism
---
A
L
156
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:79-85)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:79-85
-
1B35_HUMAN
281-287
1
A:257-263
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1a9bb_ (B:)
1b: SCOP_d1a9be_ (E:)
2a: SCOP_d1a9ba1 (A:182-277)
2b: SCOP_d1a9bd1 (D:182-277)
3a: SCOP_d1a9ba2 (A:1-181)
3b: SCOP_d1a9bd2 (D:1-181)
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Classes
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)
(
)
Folds
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)
(
)
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(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1a9bb_
B:
1b
d1a9be_
E:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1a9ba1
A:182-277
2b
d1a9bd1
D:182-277
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-B35 [TaxId: 9606]
(12)
3a
d1a9ba2
A:1-181
3b
d1a9bd2
D:1-181
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1a9bA01 (A:1-181)
1b: CATH_1a9bD01 (D:1-181)
2a: CATH_1a9bB00 (B:1-100)
2b: CATH_1a9bE00 (E:1-100)
2c: CATH_1a9bA02 (A:182-272)
2d: CATH_1a9bD02 (D:182-272)
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)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1a9bA01
A:1-181
1b
1a9bD01
D:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1a9bB00
B:1-100
2b
1a9bE00
E:1-100
2c
1a9bA02
A:182-272
2d
1a9bD02
D:182-272
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
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