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1A81
Asym. Unit
Info
Asym.Unit (255 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (129 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (42 KB)
Biol.Unit 5 (42 KB)
Biol.Unit 6 (47 KB)
Biol.Unit 7 (47 KB)
Biol.Unit 8 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TANDEM SH2 DOMAIN OF THE SYK KINASE BOUND TO A DUALLY TYROSINE-PHOSPHORYLATED ITAM
Authors
:
K. Fuetterer, G. Waksman
Date
:
31 Mar 98 (Deposition) - 21 Oct 98 (Release) - 25 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,D,E,F (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: K,L (1x)
Biol. Unit 5: G,H (1x)
Biol. Unit 6: A,B (1x)
Biol. Unit 7: I,J (1x)
Biol. Unit 8: E,F (1x)
Keywords
:
Complex (Transferase-Peptide), Syk, Kinase, Sh2 Domain, Itam, Complex (Transferase-Peptide) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Futterer, J. Wong, R. A. Grucza, A. C. Chan, G. Waksman
Structural Basis For Syk Tyrosine Kinase Ubiquity In Signal Transduction Pathways Revealed By The Crystal Structure Of Its Regulatory Sh2 Domains Bound To A Dually Phosphorylated Itam Peptide.
J. Mol. Biol. V. 281 523 1998
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
1b: O-PHOSPHOTYROSINE (PTRb)
1c: O-PHOSPHOTYROSINE (PTRc)
1d: O-PHOSPHOTYROSINE (PTRd)
1e: O-PHOSPHOTYROSINE (PTRe)
1f: O-PHOSPHOTYROSINE (PTRf)
1g: O-PHOSPHOTYROSINE (PTRg)
1h: O-PHOSPHOTYROSINE (PTRh)
1i: O-PHOSPHOTYROSINE (PTRi)
1j: O-PHOSPHOTYROSINE (PTRj)
1k: O-PHOSPHOTYROSINE (PTRk)
1l: O-PHOSPHOTYROSINE (PTRl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTR
12
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033838 (R45H, chain A/C/E/G/I/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033838
R
45
H
KSYK_HUMAN
Polymorphism
16906862
A/C/E/G/I/K
R
45
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:15-107,C:15-107,E:15-107,G:15-10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
KSYK_HUMAN
15-107
168-259
12
A:15-107
C:15-107
E:15-107
G:15-107
I:15-107
K:15-107
A:168-259
C:168-259
E:168-259
G:168-259
I:168-259
K:168-259
[
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Exons
(6, 36)
Info
All Exons
Exon 1.6 (B:168-171 | D:168-171 | F:168-171 ...)
Exon 1.7c (B:172-185 | D:172-185 | F:172-185 ...)
Exon 2.4b (A:9-139 | C:9-139 | E:9-117 | G:9-...)
Exon 2.5 (A:140-193 | C:140-193 | E:152-193 ...)
Exon 2.6 (A:193-239 | C:193-239 | E:193-239 ...)
Exon 2.7 (A:240-262 | C:240-262 | E:240-262 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5h/1.6
2: Boundary 1.6/1.7c
3: Boundary 1.7c/-
4: Boundary 2.1/2.4b
5: Boundary 2.4b/2.5
6: Boundary 2.5/2.6
7: Boundary 2.6/2.7
8: Boundary 2.7/2.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361763
1a
ENSE00001436340
chr11:
118175260-118175491
232
CD3E_HUMAN
-
0
0
-
-
1.2a
ENST00000361763
2a
ENSE00002163889
chr11:
118175609-118175716
108
CD3E_HUMAN
1-17
17
0
-
-
1.3
ENST00000361763
3
ENSE00001434733
chr11:
118178003-118178023
21
CD3E_HUMAN
17-24
8
0
-
-
1.4
ENST00000361763
4
ENSE00001605337
chr11:
118179142-118179156
15
CD3E_HUMAN
24-29
6
0
-
-
1.5b
ENST00000361763
5b
ENSE00001668030
chr11:
118182868-118182885
18
CD3E_HUMAN
29-35
7
0
-
-
1.5e
ENST00000361763
5e
ENSE00001434986
chr11:
118183333-118183581
249
CD3E_HUMAN
35-118
84
0
-
-
1.5h
ENST00000361763
5h
ENSE00001435092
chr11:
118184422-118184589
168
CD3E_HUMAN
118-174
57
0
-
-
1.6
ENST00000361763
6
ENSE00001434659
chr11:
118185163-118185209
47
CD3E_HUMAN
174-189
16
6
B:168-171
D:168-171
F:168-171
H:168-171
J:168-171
L:168-171
4
4
4
4
4
4
1.7c
ENST00000361763
7c
ENSE00002189135
chr11:
118186201-118186890
690
CD3E_HUMAN
190-207
18
6
B:172-185
D:172-185
F:172-185
H:172-185
J:172-185
L:172-185
14
14
14
14
14
14
2.1
ENST00000375754
1
ENSE00001468303
chr9:
93564069-93564175
107
KSYK_HUMAN
-
0
0
-
-
2.4b
ENST00000375754
4b
ENSE00001468302
chr9:
93606140-93606597
458
KSYK_HUMAN
1-139
139
6
A:9-139
C:9-139
E:9-117
G:9-117
I:9-139
K:9-117
131
131
109
109
131
109
2.5
ENST00000375754
5
ENSE00001176524
chr9:
93607716-93607876
161
KSYK_HUMAN
140-193
54
6
A:140-193
C:140-193
E:152-193
G:152-193
I:140-193
K:152-193
54
54
42
42
54
42
2.6
ENST00000375754
6
ENSE00001176518
chr9:
93624488-93624626
139
KSYK_HUMAN
193-239
47
6
A:193-239
C:193-239
E:193-239
G:193-239
I:193-239
K:193-239
47
47
47
47
47
47
2.7
ENST00000375754
7
ENSE00001176425
chr9:
93626871-93626949
79
KSYK_HUMAN
240-266
27
6
A:240-262
C:240-262
E:240-262
G:240-262
I:240-262
K:240-262
23
23
23
23
23
23
2.8
ENST00000375754
8
ENSE00001176505
chr9:
93627330-93627379
50
KSYK_HUMAN
266-282
17
0
-
-
2.9
ENST00000375754
9
ENSE00001176494
chr9:
93629413-93629481
69
KSYK_HUMAN
283-305
23
0
-
-
2.10
ENST00000375754
10
ENSE00001176486
chr9:
93636486-93636573
88
KSYK_HUMAN
306-335
30
0
-
-
2.11
ENST00000375754
11
ENSE00001176477
chr9:
93636954-93637131
178
KSYK_HUMAN
335-394
60
0
-
-
2.12
ENST00000375754
12
ENSE00001176467
chr9:
93639853-93640062
210
KSYK_HUMAN
394-464
71
0
-
-
2.13
ENST00000375754
13
ENSE00001176458
chr9:
93641046-93641235
190
KSYK_HUMAN
464-527
64
0
-
-
2.14
ENST00000375754
14
ENSE00001176447
chr9:
93650031-93650171
141
KSYK_HUMAN
528-574
47
0
-
-
2.15
ENST00000375754
15
ENSE00001176435
chr9:
93650797-93650909
113
KSYK_HUMAN
575-612
38
0
-
-
2.16
ENST00000375754
16
ENSE00001468273
chr9:
93657810-93660831
3022
KSYK_HUMAN
612-635
24
0
-
-
[
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SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1a81a1 (A:9-137)
1b: SCOP_d1a81a2 (A:138-262)
1c: SCOP_d1a81k1 (K:9-117)
1d: SCOP_d1a81k2 (K:152-262)
1e: SCOP_d1a81c1 (C:9-137)
1f: SCOP_d1a81c2 (C:138-262)
1g: SCOP_d1a81e1 (E:9-117)
1h: SCOP_d1a81e2 (E:152-262)
1i: SCOP_d1a81g1 (G:9-117)
1j: SCOP_d1a81g2 (G:152-262)
1k: SCOP_d1a81i1 (I:9-137)
1l: SCOP_d1a81i2 (I:138-262)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Syk tyrosine kinase
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1a81a1
A:9-137
1b
d1a81a2
A:138-262
1c
d1a81k1
K:9-117
1d
d1a81k2
K:152-262
1e
d1a81c1
C:9-137
1f
d1a81c2
C:138-262
1g
d1a81e1
E:9-117
1h
d1a81e2
E:152-262
1i
d1a81g1
G:9-117
1j
d1a81g2
G:152-262
1k
d1a81i1
I:9-137
1l
d1a81i2
I:138-262
[
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CATH Domains
(2, 15)
Info
all CATH domains
1a: CATH_1a81A03 (A:162-262)
1b: CATH_1a81C03 (C:162-262)
1c: CATH_1a81I03 (I:162-262)
1d: CATH_1a81E02 (E:168-262)
1e: CATH_1a81G02 (G:168-262)
1f: CATH_1a81K02 (K:168-262)
1g: CATH_1a81E01 (E:9-109)
1h: CATH_1a81G01 (G:9-109)
1i: CATH_1a81K01 (K:9-109)
1j: CATH_1a81A01 (A:9-116)
1k: CATH_1a81C01 (C:9-116)
1l: CATH_1a81I01 (I:9-116)
2a: CATH_1a81A02 (A:117-161)
2b: CATH_1a81C02 (C:117-161)
2c: CATH_1a81I02 (I:117-161)
View:
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)
(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1a81A03
A:162-262
1b
1a81C03
C:162-262
1c
1a81I03
I:162-262
1d
1a81E02
E:168-262
1e
1a81G02
G:168-262
1f
1a81K02
K:168-262
1g
1a81E01
E:9-109
1h
1a81G01
G:9-109
1i
1a81K01
K:9-109
1j
1a81A01
A:9-116
1k
1a81C01
C:9-116
1l
1a81I01
I:9-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Syk Kinase; Chain A, domain 2
(4)
Homologous Superfamily
:
Syk Kinase; Chain A, domain 2
(4)
Human (Homo sapiens)
(4)
2a
1a81A02
A:117-161
2b
1a81C02
C:117-161
2c
1a81I02
I:117-161
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain K
Chain L
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Asym.Unit (255 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Biol.Unit 2 (129 KB)
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Biol.Unit 3 (47 KB)
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Biol.Unit 4 (42 KB)
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