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1A7S
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
ATOMIC RESOLUTION STRUCTURE OF HBP
Authors
:
S. Karlsen, L. F. Iversen, I. K. Larsen, H. J. Flodgaard, J. S. Kastrup
Date
:
17 Mar 98 (Deposition) - 23 Mar 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.12
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Protease Homolog, Endotoxin Binding, Heparin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karlsen, L. F. Iversen, I. K. Larsen, H. J. Flodgaard, J. S. Kastrup
Atomic Resolution Structure Of Human Hbp/Cap37/Azurocidin.
Acta Crystallogr. , Sect. D V. 54 598 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
2d: ETHANOL (EOHd)
2e: ETHANOL (EOHe)
2f: ETHANOL (EOHf)
2g: ETHANOL (EOHg)
2h: ETHANOL (EOHh)
2i: ETHANOL (EOHi)
2j: ETHANOL (EOHj)
2k: ETHANOL (EOHk)
2l: ETHANOL (EOHl)
2m: ETHANOL (EOHm)
2n: ETHANOL (EOHn)
2o: ETHANOL (EOHo)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EOH
15
Ligand/Ion
ETHANOL
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:10 , SER A:103 , ASN A:114 , HOH A:533 , HOH A:569 , HOH A:668
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
ARG A:5 , ARG A:122 , PHE A:143 , ASN A:145 , ASP A:152 , NAG A:412 , HOH A:484
BINDING SITE FOR RESIDUE NAG A 411
03
AC3
SOFTWARE
ASP A:152 , NAG A:411
BINDING SITE FOR RESIDUE NAG A 412
04
AC4
SOFTWARE
LEU A:112
BINDING SITE FOR RESIDUE CL A 450
05
AC5
SOFTWARE
ARG A:10 , GLY A:56 , ALA A:57 , TYR A:58 , SER A:67 , HOH A:485 , HOH A:498 , HOH A:536
BINDING SITE FOR RESIDUE EOH A 417
06
AC6
SOFTWARE
GLY A:22 , EOH A:422 , EOH A:431 , HOH A:693 , HOH A:699
BINDING SITE FOR RESIDUE EOH A 418
07
AC7
SOFTWARE
PHE A:12 , PHE A:14 , GLN A:124 , VAL A:125 , ALA A:126 , PRO A:178 , VAL A:180
BINDING SITE FOR RESIDUE EOH A 419
08
AC8
SOFTWARE
LEU A:208 , EOH A:430 , HOH A:680 , HOH A:754
BINDING SITE FOR RESIDUE EOH A 420
09
AC9
SOFTWARE
ILE A:170 , CYS A:171 , GLY A:175 , SER A:190 , EOH A:424 , HOH A:523 , HOH A:545
BINDING SITE FOR RESIDUE EOH A 421
10
BC1
SOFTWARE
GLN A:19 , THR A:52 , VAL A:54 , THR A:70 , EOH A:418 , EOH A:431 , HOH A:587
BINDING SITE FOR RESIDUE EOH A 422
11
BC2
SOFTWARE
ARG A:132 , ARG A:136 , HOH A:622 , HOH A:741
BINDING SITE FOR RESIDUE EOH A 423
12
BC3
SOFTWARE
CYS A:171 , ASN A:172 , SER A:192 , CYS A:196 , EOH A:421 , EOH A:427
BINDING SITE FOR RESIDUE EOH A 424
13
BC4
SOFTWARE
GLN A:153 , PRO A:200 , PHE A:202 , HOH A:566 , HOH A:669 , HOH A:691
BINDING SITE FOR RESIDUE EOH A 425
14
BC5
SOFTWARE
GLN A:85 , LEU A:87 , ARG A:166
BINDING SITE FOR RESIDUE EOH A 426
15
BC6
SOFTWARE
EOH A:424 , HOH A:552 , HOH A:678 , HOH A:687
BINDING SITE FOR RESIDUE EOH A 427
16
BC7
SOFTWARE
GLN A:69 , THR A:70 , ARG A:97
BINDING SITE FOR RESIDUE EOH A 428
17
BC8
SOFTWARE
GLN A:94 , PRO A:220 , GLY A:221 , HOH A:675
BINDING SITE FOR RESIDUE EOH A 429
18
BC9
SOFTWARE
PRO A:156 , ARG A:205 , EOH A:420 , HOH A:746
BINDING SITE FOR RESIDUE EOH A 430
19
CC1
SOFTWARE
EOH A:418 , EOH A:422
BINDING SITE FOR RESIDUE EOH A 431
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:1-218)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CAP7_HUMAN
27-244
1
A:1-218
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.3 (A:1-43)
Exon 1.4 (A:48-94)
Exon 1.5a (A:95-172)
Exon 1.5c (A:173-225)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.5c
5: Boundary 1.5c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000233997
2
ENSE00001236585
chr19:
827831-827904
74
CAP7_HUMAN
1-20
20
0
-
-
1.3
ENST00000233997
3
ENSE00001236572
chr19:
828230-828386
157
CAP7_HUMAN
20-72
53
1
A:1-43
43
1.4
ENST00000233997
4
ENSE00001236566
chr19:
829562-829706
145
CAP7_HUMAN
72-120
49
1
A:48-94
47
1.5a
ENST00000233997
5a
ENSE00001332741
chr19:
830708-830941
234
CAP7_HUMAN
121-198
78
1
A:95-172
78
1.5c
ENST00000233997
5c
ENSE00001154873
chr19:
831716-832017
302
CAP7_HUMAN
199-251
53
1
A:173-225
53
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1a7sa_ (A:)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Heparin binding protein, HBP
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1a7sa_
A:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1a7sA01 (A:1-12,A:108-207)
1b: CATH_1a7sA02 (A:13-107,A:208-221)
View:
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Classes
(
)
(
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1a7sA01
A:1-12,A:108-207
1b
1a7sA02
A:13-107,A:208-221
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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