PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1A6Z
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HFE (HUMAN) HEMOCHROMATOSIS PROTEIN
Authors
:
J. A. Lebron, M. J. Bennett, D. E. Vaughn, A. J. Chirino, P. M. Snow, G. A. Mintier, J. N. Feder, P. J. Bjorkman
Date
:
04 Mar 98 (Deposition) - 23 Mar 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hfe, Hereditary Hemochromatosis, Mhc Class I, Mhc Class I Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Lebron, M. J. Bennett, D. E. Vaughn, A. J. Chirino, P. M. Snow, G. A. Mintier, J. N. Feder, P. J. Bjorkman
Crystal Structure Of The Hemochromatosis Protein Hfe And Characterization Of Its Interaction With Transferrin Receptor.
Cell(Cambridge, Mass. ) V. 93 111 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(17, 34)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_042507 (G21D, chain A/C, )
02: VAR_008111 (V31M, chain A/C, )
03: VAR_008112 (V37M, chain A/C, )
04: VAR_004396 (H41D, chain A/C, )
05: VAR_004397 (S43C, chain A/C, )
06: VAR_042508 (R44C, chain A/C, )
07: VAR_008729 (G71R, chain A/C, )
08: VAR_008730 (I83T, chain A/C, )
09: VAR_008113 (Q105H, chain A/C, )
10: VAR_042509 (A154V, chain A/C, )
11: VAR_020270 (T195I, chain A/C, )
12: VAR_042510 (R202G, chain A/C, )
13: VAR_062279 (R202Q, chain A/C, )
14: VAR_008731 (E255K, chain A/C, )
15: VAR_004398 (C260Y, chain A/C, )
16: VAR_037304 (Q261P, chain A/C, )
17: VAR_042511 (V273A, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_042507
G
43
D
HFE_HUMAN
Disease (HFE1)
---
A/C
G
21
D
02
UniProt
VAR_008111
V
53
M
HFE_HUMAN
Polymorphism
28934889
A/C
V
31
M
03
UniProt
VAR_008112
V
59
M
HFE_HUMAN
Polymorphism
28934890
A/C
V
37
M
04
UniProt
VAR_004396
H
63
D
HFE_HUMAN
Polymorphism
1799945
A/C
H
41
D
05
UniProt
VAR_004397
S
65
C
HFE_HUMAN
Disease (HFE1)
1800730
A/C
S
43
C
06
UniProt
VAR_042508
R
66
C
HFE_HUMAN
Disease (HFE1)
---
A/C
R
44
C
07
UniProt
VAR_008729
G
93
R
HFE_HUMAN
Disease (HFE1)
28934597
A/C
G
71
R
08
UniProt
VAR_008730
I
105
T
HFE_HUMAN
Disease (HFE1)
28934596
A/C
I
83
T
09
UniProt
VAR_008113
Q
127
H
HFE_HUMAN
Disease (HFE1)
28934595
A/C
Q
105
H
10
UniProt
VAR_042509
A
176
V
HFE_HUMAN
Unclassified
---
A/C
A
154
V
11
UniProt
VAR_020270
T
217
I
HFE_HUMAN
Polymorphism
4986950
A/C
T
195
I
12
UniProt
VAR_042510
R
224
G
HFE_HUMAN
Disease (HFE1)
---
A/C
R
202
G
13
UniProt
VAR_062279
R
224
Q
HFE_HUMAN
Polymorphism
62625346
A/C
R
202
Q
14
UniProt
VAR_008731
E
277
K
HFE_HUMAN
Polymorphism
140080192
A/C
E
255
K
15
UniProt
VAR_004398
C
282
Y
HFE_HUMAN
Disease (HFE1)
1800562
A/C
C
260
Y
16
UniProt
VAR_037304
Q
283
P
HFE_HUMAN
Disease (HFE1)
---
A/C
Q
261
P
17
UniProt
VAR_042511
V
295
A
HFE_HUMAN
Disease (HFE1)
143175221
A/C
V
273
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,A:258-264,C:258-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
2
B:78-84
D:78-84
HFE_HUMAN
280-286
2
A:258-264
C:258-264
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.1b (A:4-4 | C:4-4)
Exon 1.2a (A:4-92 | C:4-92)
Exon 1.2d (A:92-184 | C:92-184)
Exon 1.3c (A:184-275 | C:184-275)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2a
3: Boundary 1.2a/1.2d
4: Boundary 1.2d/1.3c
5: Boundary 1.3c/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000357618
1b
ENSE00002141786
chr6:
26087547-26087744
198
HFE_HUMAN
1-26
26
2
A:4-4
C:4-4
1
1
1.2a
ENST00000357618
2a
ENSE00001984790
chr6:
26091069-26091332
264
HFE_HUMAN
26-114
89
2
A:4-92
C:4-92
89
89
1.2d
ENST00000357618
2d
ENSE00001641676
chr6:
26091542-26091817
276
HFE_HUMAN
114-206
93
2
A:92-184
C:92-184
93
93
1.3c
ENST00000357618
3c
ENSE00001682402
chr6:
26092913-26093188
276
HFE_HUMAN
206-298
93
2
A:184-275
C:184-275
92
92
1.4
ENST00000357618
4
ENSE00001974207
chr6:
26093347-26093460
114
HFE_HUMAN
298-336
39
0
-
-
1.5i
ENST00000357618
5i
ENSE00001913586
chr6:
26094414-26098571
4158
HFE_HUMAN
336-348
13
0
-
-
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1a6zb_ (B:)
1b: SCOP_d1a6zd_ (D:)
2a: SCOP_d1a6za1 (A:182-275)
2b: SCOP_d1a6zc1 (C:182-275)
3a: SCOP_d1a6za2 (A:4-181)
3b: SCOP_d1a6zc2 (C:4-181)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1a6zb_
B:
1b
d1a6zd_
D:
Protein domain
:
Hemochromatosis protein Hfe, alpha-3 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1a6za1
A:182-275
2b
d1a6zc1
C:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Hemochromatosis protein Hfe, alpha-1 and alpha-2 domains
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d1a6za2
A:4-181
3b
d1a6zc2
C:4-181
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1a6zA01 (A:4-182)
1b: CATH_1a6zC01 (C:4-182)
2a: CATH_1a6zB00 (B:1-99)
2b: CATH_1a6zD00 (D:1-99)
2c: CATH_1a6zA02 (A:183-273)
2d: CATH_1a6zC02 (C:183-273)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1a6zA01
A:4-182
1b
1a6zC01
C:4-182
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1a6zB00
B:1-99
2b
1a6zD00
D:1-99
2c
1a6zA02
A:183-273
2d
1a6zC02
C:183-273
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1A6Z
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
