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1A4K
Biol. Unit 1
Info
Asym.Unit (148 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
DIELS ALDER CATALYTIC ANTIBODY WITH TRANSITION STATE ANALOGUE
Authors
:
B. W. Spiller, F. E. Romesburg, P. G. Schultz, R. C. Stevens
Date
:
30 Jan 98 (Deposition) - 13 May 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Immunoglobulin, Antibody, Catalytic Antibody, Diels Alder, Germline
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. E. Romesberg, B. Spiller, P. G. Schultz, R. C. Stevens
Immunological Origins Of Binding And Catalysis In A Diels-Alderase Antibody.
Science V. 279 1929 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: [4-(4-ACETYLAMINO-PHENYL)-3,5-DIOX... (FRAa)
2b: [4-(4-ACETYLAMINO-PHENYL)-3,5-DIOX... (FRAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
FRA
1
Ligand/Ion
[4-(4-ACETYLAMINO-PHENYL)-3,5-DIOXO-4-AZA-TRICYCLO[5.2.2.0 2,6]UNDEC-1-YLCARBAMOYLOXY]-ACETICACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU L:79 , GLU L:81 , HIS L:93 , HOH L:5037 , HOH L:5038 , HOH L:5039
BINDING SITE FOR RESIDUE CD L 5028
2
AC3
SOFTWARE
HIS H:164 , ASN L:138 , HOH L:5049 , HOH L:5057
BINDING SITE FOR RESIDUE CD L 5029
3
AC5
SOFTWARE
ASN B:31 , GLY B:33 , ASN B:35 , ALA B:95 , GLU B:96 , ARG B:97 , ARG B:100 , TYR H:53
BINDING SITE FOR RESIDUE FRA B 3083
4
AC6
SOFTWARE
TYR B:53 , ASN H:31 , GLY H:33 , ASN H:35 , TRP H:50 , ALA H:95 , ARG H:97 , ARG H:100 , HOH H:3114 , HOH H:3127
BINDING SITE FOR RESIDUE FRA H 3083
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_066403 (W148R, chain L, )
2: VAR_003897 (V191L, chain L, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066403
W
40
R
IGKC_HUMAN
Disease (IGKCD)
---
L
W
148
R
2
UniProt
VAR_003897
V
83
L
IGKC_HUMAN
Unclassified
---
L
V
191
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_HUMAN
85-91
1
-
L:192-198
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1a4kb2 (B:120-213)
1b: SCOP_d1a4kh2 (H:120-211)
2a: SCOP_d1a4ka2 (A:113-211)
2b: SCOP_d1a4kl2 (L:113-212)
3a: SCOP_d1a4kb1 (B:1-119)
3b: SCOP_d1a4kh1 (H:1-119)
4a: SCOP_d1a4ka1 (A:1-112)
4b: SCOP_d1a4kl1 (L:1-112)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1a4kb2
B:120-213
1b
d1a4kh2
H:120-211
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1a4ka2
A:113-211
2b
d1a4kl2
L:113-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(34)
3a
d1a4kb1
B:1-119
3b
d1a4kh1
H:1-119
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
(131)
4a
d1a4ka1
A:1-112
4b
d1a4kl1
L:1-112
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1a4kL02 (L:109-211)
1b: CATH_1a4kB02 (B:114-213)
1c: CATH_1a4kH02 (H:114-211)
1d: CATH_1a4kA01 (A:1-107)
1e: CATH_1a4kL01 (L:1-108)
1f: CATH_1a4kB01 (B:1-113)
1g: CATH_1a4kH01 (H:1-113)
1h: CATH_1a4kA02 (A:108-211)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1a4kL02
L:109-211
1b
1a4kB02
B:114-213
1c
1a4kH02
H:114-211
1d
1a4kA01
A:1-107
1e
1a4kL01
L:1-108
1f
1a4kB01
B:1-113
1g
1a4kH01
H:1-113
1h
1a4kA02
A:108-211
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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