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1A3Q
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (118 KB)
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(1)
Title
:
HUMAN NF-KAPPA-B P52 BOUND TO DNA
Authors
:
P. Cramer, C. J. Larson, G. L. Verdine, C. W. Muller
Date
:
23 Jan 98 (Deposition) - 11 Jun 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transcription Factor, Immune Response, Dna-Protein Complex, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Cramer, C. J. Larson, G. L. Verdine, C. W. Muller
Structure Of The Human Nf-Kappab P52 Homodimer-Dna Complex At 2. 1 A Resolution.
Embo J. V. 16 7078 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REL_1 (A:53-59,B:53-59)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_1
PS01204
NF-kappa-B/Rel/dorsal domain signature.
NFKB2_HUMAN
53-59
2
A:53-59
B:53-59
[
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Exons
(8, 16)
Info
All Exons
Exon 1.4 (A:37-48 | B:37-48)
Exon 1.5b (A:49-81 | B:49-81)
Exon 1.6 (A:82-132 | B:82-132)
Exon 1.7 (A:132-168 | B:132-168)
Exon 1.8 (A:168-221 (gaps) | B:168-221 (gaps...)
Exon 1.9 (A:221-256 | B:221-256)
Exon 1.10 (A:256-284 | B:256-284)
Exon 1.11 (A:285-327 | B:285-327)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.11
9: Boundary 1.11/1.12a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000369966
1b
ENSE00001451363
chr10:
104154354-104154531
178
NFKB2_HUMAN
-
0
0
-
-
1.2d
ENST00000369966
2d
ENSE00002189547
chr10:
104155645-104155737
93
NFKB2_HUMAN
1-7
7
0
-
-
1.3
ENST00000369966
3
ENSE00001377720
chr10:
104156010-104156091
82
NFKB2_HUMAN
8-35
28
0
-
-
1.4
ENST00000369966
4
ENSE00000811509
chr10:
104156206-104156246
41
NFKB2_HUMAN
35-48
14
2
A:37-48
B:37-48
12
12
1.5b
ENST00000369966
5b
ENSE00000811510
chr10:
104156482-104156580
99
NFKB2_HUMAN
49-81
33
2
A:49-81
B:49-81
33
33
1.6
ENST00000369966
6
ENSE00000503288
chr10:
104156661-104156812
152
NFKB2_HUMAN
82-132
51
2
A:82-132
B:82-132
51
51
1.7
ENST00000369966
7
ENSE00000811512
chr10:
104157059-104157165
107
NFKB2_HUMAN
132-168
37
2
A:132-168
B:132-168
37
37
1.8
ENST00000369966
8
ENSE00000811513
chr10:
104157284-104157442
159
NFKB2_HUMAN
168-221
54
2
A:168-221 (gaps)
B:168-221 (gaps)
54
54
1.9
ENST00000369966
9
ENSE00000811514
chr10:
104157738-104157842
105
NFKB2_HUMAN
221-256
36
2
A:221-256
B:221-256
36
36
1.10
ENST00000369966
10
ENSE00000811515
chr10:
104157969-104158054
86
NFKB2_HUMAN
256-284
29
2
A:256-284
B:256-284
29
29
1.11
ENST00000369966
11
ENSE00000811516
chr10:
104158142-104158280
139
NFKB2_HUMAN
285-331
47
2
A:285-327
B:285-327
43
43
1.12a
ENST00000369966
12a
ENSE00000503294
chr10:
104158496-104158621
126
NFKB2_HUMAN
331-373
43
0
-
-
1.13
ENST00000369966
13
ENSE00000722725
chr10:
104159045-104159254
210
NFKB2_HUMAN
373-443
71
0
-
-
1.14
ENST00000369966
14
ENSE00001192756
chr10:
104159334-104159475
142
NFKB2_HUMAN
443-490
48
0
-
-
1.15
ENST00000369966
15
ENSE00000722730
chr10:
104159837-104159951
115
NFKB2_HUMAN
490-528
39
0
-
-
1.16
ENST00000369966
16
ENSE00000722731
chr10:
104160035-104160248
214
NFKB2_HUMAN
529-600
72
0
-
-
1.17b
ENST00000369966
17b
ENSE00000722732
chr10:
104160412-104160581
170
NFKB2_HUMAN
600-656
57
0
-
-
1.18a
ENST00000369966
18a
ENSE00000722733
chr10:
104160704-104160806
103
NFKB2_HUMAN
657-691
35
0
-
-
1.18c
ENST00000369966
18c
ENSE00000722734
chr10:
104160937-104161088
152
NFKB2_HUMAN
691-741
51
0
-
-
1.19
ENST00000369966
19
ENSE00000722737
chr10:
104161206-104161275
70
NFKB2_HUMAN
742-765
24
0
-
-
1.20
ENST00000369966
20
ENSE00000722739
chr10:
104161502-104161674
173
NFKB2_HUMAN
765-822
58
0
-
-
1.21
ENST00000369966
21
ENSE00000722741
chr10:
104161805-104161916
112
NFKB2_HUMAN
823-860
38
0
-
-
1.22b
ENST00000369966
22b
ENSE00001192799
chr10:
104162009-104162281
273
NFKB2_HUMAN
860-900
41
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1a3qa2 (A:37-226)
1b: SCOP_d1a3qb2 (B:37-226)
2a: SCOP_d1a3qa1 (A:227-327)
2b: SCOP_d1a3qb1 (B:227-327)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
p52 subunit of NF-kappa B (NFKB), N-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1a3qa2
A:37-226
1b
d1a3qb2
B:37-226
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
p52 subunit of NF-kappa B (NFKB)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1a3qa1
A:227-327
2b
d1a3qb1
B:227-327
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1a3qA01 (A:37-221)
1b: CATH_1a3qB01 (B:37-221)
2a: CATH_1a3qA02 (A:225-322)
2b: CATH_1a3qB02 (B:225-322)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
1a3qA01
A:37-221
1b
1a3qB01
B:37-221
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
1a3qA02
A:225-322
2b
1a3qB02
B:225-322
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (123 KB)
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