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1A2V
Asym. Unit
Info
Asym.Unit (683 KB)
Biol.Unit 1 (677 KB)
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(1)
Title
:
COPPER AMINE OXIDASE FROM HANSENULA POLYMORPHA
Authors
:
R. Li, F. S. Mathews
Date
:
12 Jan 98 (Deposition) - 27 May 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Amine Oxidase, Quinoprotein, Topaquinone Enzyme, Tpq
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Li, L. Chen, D. Cai, J. P. Klinman, F. S. Mathews
Crystallographic Study Of Yeast Copper Amine Oxidase.
Acta Crystallogr. , Sect. D V. 53 364 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
2b: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQb)
2c: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQc)
2d: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQd)
2e: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQe)
2f: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
2
TPQ
6
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:456 , HIS A:458 , HIS A:624 , HOH A:753
BINDING SITE FOR RESIDUE CU A 1
2
AC2
SOFTWARE
HIS B:456 , HIS B:458 , HIS B:624 , HOH B:811
BINDING SITE FOR RESIDUE CU B 1
3
AC3
SOFTWARE
HIS C:456 , HIS C:458 , HIS C:624 , HOH C:807
BINDING SITE FOR RESIDUE CU C 1
4
AC4
SOFTWARE
HIS F:456 , HIS F:458 , HIS F:624 , HOH F:763
BINDING SITE FOR RESIDUE CU D 1
5
AC5
SOFTWARE
HIS E:456 , HIS E:458 , HIS E:624 , HOH E:851 , HOH E:852
BINDING SITE FOR RESIDUE CU E 1
6
AC6
SOFTWARE
HIS D:456 , HIS D:458 , HIS D:624 , HOH D:774 , HOH D:1085
BINDING SITE FOR RESIDUE CU F 1
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:394-407,B:394-407,C:394-407,D:39...)
2: COPPER_AMINE_OXID_2 (A:619-632,B:619-632,C:619-632,D:61...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AMO_PICAN
394-407
6
A:394-407
B:394-407
C:394-407
D:394-407
E:394-407
F:394-407
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AMO_PICAN
619-632
6
A:619-632
B:619-632
C:619-632
D:619-632
E:619-632
F:619-632
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 18)
Info
All SCOP Domains
1a: SCOP_d1a2va1 (A:237-672)
1b: SCOP_d1a2vb1 (B:237-672)
1c: SCOP_d1a2vc1 (C:237-672)
1d: SCOP_d1a2vd1 (D:237-672)
1e: SCOP_d1a2ve1 (E:237-672)
1f: SCOP_d1a2vf1 (F:237-672)
2a: SCOP_d1a2va2 (A:18-115)
2b: SCOP_d1a2va3 (A:116-236)
2c: SCOP_d1a2vb2 (B:18-115)
2d: SCOP_d1a2vb3 (B:116-236)
2e: SCOP_d1a2vc2 (C:18-115)
2f: SCOP_d1a2vc3 (C:116-236)
2g: SCOP_d1a2vd2 (D:18-115)
2h: SCOP_d1a2vd3 (D:116-236)
2i: SCOP_d1a2ve2 (E:18-115)
2j: SCOP_d1a2ve3 (E:116-236)
2k: SCOP_d1a2vf2 (F:18-115)
2l: SCOP_d1a2vf3 (F:116-236)
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)
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)
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Yeast (Hansenula polymorpha) [TaxId: 4905]
(4)
1a
d1a2va1
A:237-672
1b
d1a2vb1
B:237-672
1c
d1a2vc1
C:237-672
1d
d1a2vd1
D:237-672
1e
d1a2ve1
E:237-672
1f
d1a2vf1
F:237-672
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Yeast (Hansenula polymorpha) [TaxId: 4905]
(4)
2a
d1a2va2
A:18-115
2b
d1a2va3
A:116-236
2c
d1a2vb2
B:18-115
2d
d1a2vb3
B:116-236
2e
d1a2vc2
C:18-115
2f
d1a2vc3
C:116-236
2g
d1a2vd2
D:18-115
2h
d1a2vd3
D:116-236
2i
d1a2ve2
E:18-115
2j
d1a2ve3
E:116-236
2k
d1a2vf2
F:18-115
2l
d1a2vf3
F:116-236
[
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1a2vA01 (A:18-117)
1b: CATH_1a2vB01 (B:18-117)
1c: CATH_1a2vB02 (B:123-231)
1d: CATH_1a2vC02 (C:123-231)
1e: CATH_1a2vD02 (D:123-231)
1f: CATH_1a2vE02 (E:123-231)
1g: CATH_1a2vF02 (F:123-231)
1h: CATH_1a2vC01 (C:18-117)
1i: CATH_1a2vD01 (D:18-117)
1j: CATH_1a2vE01 (E:18-117)
1k: CATH_1a2vF01 (F:18-117)
1l: CATH_1a2vA02 (A:123-231)
2a: CATH_1a2vA03 (A:232-670)
2b: CATH_1a2vB03 (B:232-670)
2c: CATH_1a2vC03 (C:232-670)
2d: CATH_1a2vD03 (D:232-670)
2e: CATH_1a2vE03 (E:232-670)
2f: CATH_1a2vF03 (F:232-670)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Pichia angusta. Organism_taxid: 4905.
(2)
1a
1a2vA01
A:18-117
1b
1a2vB01
B:18-117
1c
1a2vB02
B:123-231
1d
1a2vC02
C:123-231
1e
1a2vD02
D:123-231
1f
1a2vE02
E:123-231
1g
1a2vF02
F:123-231
1h
1a2vC01
C:18-117
1i
1a2vD01
D:18-117
1j
1a2vE01
E:18-117
1k
1a2vF01
F:18-117
1l
1a2vA02
A:123-231
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Pichia angusta. Organism_taxid: 4905.
(2)
2a
1a2vA03
A:232-670
2b
1a2vB03
B:232-670
2c
1a2vC03
C:232-670
2d
1a2vD03
D:232-670
2e
1a2vE03
E:232-670
2f
1a2vF03
F:232-670
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Pfam Domains
(0, 0)
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