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1A20
Theor. Model
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Theoretical Model (57 KB)
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(1)
Title
:
MOLECULAR MODEL FOR A PLEUROTUS ERYNGII PEROXIDASE OXIDIZING MNII AS WELL AS DIFFERENT PHENOLIC AND NON-PHENOLIC AROMATIC COMPOUNDS AND DYES, THEORETICAL MODEL
Authors
:
A. T. Martinez, A. Romero, F. J. Ruiz-Duenas, M. J. Martinez
Date
:
13 Jan 98 (Deposition) - 16 Feb 99 (Release) - 16 Feb 99 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Polyvalent Peroxidase, Manganese Peroxidase, Lignin Peroxidase, Homology Modeling, Mnii-Binding Site, Aromatic- Substrate Binding, Electron Transfer, Allelic Variant, Lignin Degradation, Mnii Oxidation, Mn-Independent Oxidation Of Phenolic And Non-Phenolic Aromatics And Dyes, Class Ii (Fungal) Peroxidases
(Keyword Search:
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Reference
:
F. J. Ruiz-Duenas, M. J. Martinez, A. T. Martinez
Molecular Characterization Of A Novel Peroxidase Isolated From The Ligninolytic Fungus Pleurotus Eryngii.
Mol. Microbiol. V. 31 223 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: MANGANESE (II) ION (MNa)
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No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MN
1
Ligand/Ion
MANGANESE (II) ION
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Sites
(4, 4)
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All Sites
1: CA1 (not defined)
2: CA2 (not defined)
3: HME (not defined)
4: MN (not defined)
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No.
Name
Evidence
Residues
Description
1
CA1
not defined
ASP A:48 , GLY A:60 , ASP A:62 , SER A:64
DISTAL CA-BINDING SITE.
2
CA2
not defined
SER A:170 , ASP A:187 , THR A:189 , VAL A:192 , ASP A:194
PROXIMAL CA-BINDING SITE.
3
HME
not defined
ARG A:43 , PHE A:46 , HIS A:47 , HIS A:169 , PHE A:186 , ASP A:231
CHARACTERISTIC HEME POCKET RESIDUES (DISTAL AND PROXIMAL SIDES)
4
MN
not defined
GLU A:36 , GLU A:40 , ALA A:174 , ASP A:175 , HEM _:396
MN-BINDING SITE.
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 2)
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1: PEROXIDASE_2 (A:38-49)
2: PEROXIDASE_1 (A:161-171)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
VPL1_PLEER
68-79
1
A:38-49
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
VPL1_PLEER
191-201
1
A:161-171
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