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1A14
Biol. Unit 1
Info
Asym.Unit (112 KB)
Biol.Unit 1 (410 KB)
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(1)
Title
:
COMPLEX BETWEEN NC10 ANTI-INFLUENZA VIRUS NEURAMINIDASE SINGLE CHAIN ANTIBODY WITH A 5 RESIDUE LINKER AND INFLUENZA VIRUS NEURAMINIDASE
Authors
:
R. L. Malby, A. J. Mccoy, A. A. Kortt, P. J. Hudson, P. M. Colman
Date
:
21 Dec 97 (Deposition) - 13 May 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : H,L,N
Biol. Unit 1: H,L,N (4x)
Keywords
:
Complex (Antibody-Antigen), Single-Chain Antibody, Glycosylated Protein, Complex (Antibody-Antigen) Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. L. Malby, A. J. Mccoy, A. A. Kortt, P. J. Hudson, P. M. Colman
Three-Dimensional Structures Of Single-Chain Fv-Neuraminidase Complexes.
J. Mol. Biol. V. 279 901 1998
(for further references see the
PDB file header
)
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MAN
16
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN N:199 , ASN N:200 , ARG N:220 , LEU N:453 , GLY N:454 , GLN N:455 , NAG N:470B
BINDING SITE FOR RESIDUE NAG N 469A
02
AC2
SOFTWARE
GLN N:392 , GLY N:394 , PHE N:452 , NAG N:469A , BMA N:471C
BINDING SITE FOR RESIDUE NAG N 470B
03
AC3
SOFTWARE
LEU N:377 , THR N:391 , GLY N:394 , NAG N:470B , MAN N:472D , MAN N:475G
BINDING SITE FOR RESIDUE BMA N 471C
04
AC4
SOFTWARE
ARG N:364 , GLU N:375 , LEU N:377 , BMA N:471C , MAN N:473E , MAN N:474F
BINDING SITE FOR RESIDUE MAN N 472D
05
AC5
SOFTWARE
VAL N:321 , ASP N:330 , LYS N:389 , PRO N:390 , MAN N:472D , MAN N:474F
BINDING SITE FOR RESIDUE MAN N 473E
06
AC6
SOFTWARE
ARG H:100 , ASP H:100B , TYR L:32 , ARG N:327 , ASN N:329 , ASP N:330 , ARG N:364 , ILE N:366 , MAN N:472D , MAN N:473E
BINDING SITE FOR RESIDUE MAN N 474F
07
AC7
SOFTWARE
THR N:391 , BMA N:471C
BINDING SITE FOR RESIDUE MAN N 475G
08
AC8
SOFTWARE
ASN N:146 , TRP N:437
BINDING SITE FOR RESIDUE NAG N 476A
09
AC9
SOFTWARE
PHE N:84 , ASN N:86 , ASN N:234
BINDING SITE FOR RESIDUE NDG N 477A
10
BC1
SOFTWARE
ASP N:293 , GLY N:297 , ASP N:324 , ASN N:347
BINDING SITE FOR RESIDUE CA N 478
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1a14n_ (N:)
2a: SCOP_d1a14h_ (H:)
3a: SCOP_d1a14l_ (L:)
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Classes
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(
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Folds
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1a14n_
N:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
2a
d1a14h_
H:
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
3a
d1a14l_
L:
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1a14N00 (N:82-468)
2a: CATH_1a14H00 (H:1-111)
2b: CATH_1a14L00 (L:1-104)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320. Strain: n9, a/tern/australia/g70c/75. Mus musculus. House mouse. Organism_taxid: 10090.
(1)
1a
1a14N00
N:82-468
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Influenza a virus. Organism_taxid: 11320. Strain: n9, a/tern/australia/g70c/75. Mus musculus. House mouse. Organism_taxid: 10090.
(1)
2a
1a14H00
H:1-111
2b
1a14L00
L:1-104
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Pfam Domains
(0, 0)
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Chain N
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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Show PDB file:
Asym.Unit (112 KB)
Header - Asym.Unit
Biol.Unit 1 (410 KB)
Header - Biol.Unit 1
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