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19HC
Asym. Unit
Info
Asym.Unit (196 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
NINE-HAEM CYTOCHROME C FROM DESULFOVIBRIO DESULFURICANS ATCC 27774
Authors
:
P. M. Matias, R. Coelho, I. A. C. Pereira, A. V. Coelho, A. W. Thompson, L. Sieker, J. L. Gall, M. A. Carrondo
Date
:
27 Nov 98 (Deposition) - 01 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Electron Transfer, Cytochrome, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Matias, R. Coelho, I. A. Pereira, A. V. Coelho, A. W. Thompson, L. C. Sieker, J. L. Gall, M. A. Carrondo
The Primary And Three-Dimensional Structures Of A Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 Reveal A New Member Of The Hmc Family.
Structure Fold. Des. V. 7 119 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 23)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
2o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
2p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
2q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
2r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
HEM
18
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:11 , SER A:12 , HOH A:332 , HOH A:462
BINDING SITE FOR RESIDUE ACT A 293
02
AC2
SOFTWARE
SER A:232 , PRO A:233 , HOH A:482 , HOH A:755 , ASP B:122 , GLU B:124 , HEM B:305
BINDING SITE FOR RESIDUE ACT A 294
03
AC3
SOFTWARE
HIS A:81 , TRP A:126 , HEM A:305
BINDING SITE FOR RESIDUE ACT A 295
04
AC4
SOFTWARE
ASP A:122 , GLU A:124 , HEM A:305 , HOH A:634 , ARG B:231 , SER B:232 , PRO B:233
BINDING SITE FOR RESIDUE ACT B 293
05
AC5
SOFTWARE
MET B:260 , ALA B:261 , HIS B:264 , HOH B:511
BINDING SITE FOR RESIDUE ACT B 294
06
AC6
SOFTWARE
SER A:8 , ALA A:10 , ILE A:14 , MET A:16 , PHE A:35 , HIS A:37 , ILE A:44 , CYS A:47 , CYS A:50 , HIS A:51 , PRO A:56 , VAL A:57 , SER A:58 , HEM A:303 , HOH A:382 , HOH A:432 , HOH A:519 , HOH A:538 , HOH A:583
BINDING SITE FOR RESIDUE HEM A 301
07
AC7
SOFTWARE
CYS A:50 , HIS A:52 , THR A:53 , ASP A:55 , VAL A:57 , CYS A:59 , THR A:61 , CYS A:62 , HIS A:63 , GLU A:70 , GLY A:71 , ASP A:72 , ILE A:74 , ARG A:78 , ALA A:79 , MET A:80 , ARG A:88 , PRO A:94 , THR A:95 , HOH A:466 , HOH A:629 , HOH A:660
BINDING SITE FOR RESIDUE HEM A 302
08
AC8
SOFTWARE
VAL A:33 , PHE A:35 , ASN A:36 , ILE A:39 , HIS A:40 , LYS A:43 , THR A:95 , SER A:96 , CYS A:97 , CYS A:100 , HIS A:101 , LYS A:212 , LEU A:213 , ALA A:216 , HEM A:301 , HOH A:310 , HOH A:325 , HOH A:401 , HOH A:415 , HOH A:458 , HOH A:507 , HOH A:528
BINDING SITE FOR RESIDUE HEM A 303
09
AC9
SOFTWARE
GLN A:102 , THR A:105 , ARG A:108 , GLU A:110 , CYS A:111 , CYS A:114 , HIS A:115 , THR A:118 , THR A:119 , PRO A:120 , LYS A:121 , TRP A:126 , ILE A:208 , ASP A:211 , PHE A:217 , HIS A:218 , ILE A:223 , LEU A:224 , THR A:227 , HOH A:335 , HOH A:357
BINDING SITE FOR RESIDUE HEM A 304
10
BC1
SOFTWARE
MET A:16 , PHE A:17 , PRO A:18 , ALA A:29 , MET A:30 , LYS A:31 , PRO A:32 , VAL A:33 , LEU A:76 , MET A:80 , HIS A:81 , CYS A:97 , TRP A:126 , CYS A:127 , CYS A:130 , HIS A:131 , ACT A:295 , HOH A:320 , HOH A:741 , ARG B:231 , PRO B:239 , SER B:243 , ACT B:293
BINDING SITE FOR RESIDUE HEM A 305
11
BC2
SOFTWARE
VAL A:172 , ALA A:177 , PRO A:178 , PHE A:195 , HIS A:197 , LEU A:201 , LEU A:224 , CYS A:225 , CYS A:228 , HIS A:229 , SER A:235 , LEU A:236 , PRO A:238 , LYS A:240 , CYS A:241 , TYR A:263 , HEM A:308 , HOH A:314 , HOH A:481 , HOH A:750 , LYS B:26 , HOH B:375
BINDING SITE FOR RESIDUE HEM A 306
12
BC3
SOFTWARE
CYS A:228 , HIS A:230 , ARG A:231 , LYS A:240 , CYS A:241 , CYS A:244 , HIS A:245 , ARG A:256 , PRO A:257 , ALA A:262 , LEU A:265 , GLU A:266 , HOH A:354 , HOH A:503 , HOH A:587 , HOH A:684
BINDING SITE FOR RESIDUE HEM A 307
13
BC4
SOFTWARE
CYS A:114 , ILE A:117 , SER A:193 , PHE A:195 , THR A:196 , HIS A:200 , SER A:203 , LEU A:204 , CYS A:267 , CYS A:270 , HIS A:271 , MET A:274 , VAL A:276 , ARG A:278 , PRO A:279 , HEM A:306 , HEM A:309 , HOH A:392 , HOH A:426
BINDING SITE FOR RESIDUE HEM A 308
14
BC5
SOFTWARE
ILE A:183 , ASP A:184 , ALA A:185 , LEU A:186 , ALA A:187 , ASP A:188 , LYS A:189 , TYR A:190 , SER A:193 , MET A:260 , TYR A:263 , HIS A:264 , CYS A:267 , MET A:268 , HIS A:271 , ARG A:280 , ASP A:281 , ASP A:283 , CYS A:284 , CYS A:287 , HIS A:288 , HEM A:308 , HOH A:322 , HOH A:352
BINDING SITE FOR RESIDUE HEM A 309
15
BC6
SOFTWARE
SER B:8 , ALA B:10 , ILE B:14 , MET B:16 , PHE B:35 , HIS B:37 , ILE B:44 , CYS B:47 , CYS B:50 , HIS B:51 , PRO B:56 , SER B:58 , CYS B:59 , HOH B:392 , HOH B:405 , HOH B:499
BINDING SITE FOR RESIDUE HEM B 301
16
BC7
SOFTWARE
CYS B:50 , HIS B:52 , THR B:53 , VAL B:57 , CYS B:59 , THR B:61 , CYS B:62 , HIS B:63 , GLU B:70 , ARG B:78 , ALA B:79 , MET B:80 , ARG B:88 , PRO B:94 , THR B:95 , HOH B:447 , HOH B:508
BINDING SITE FOR RESIDUE HEM B 302
17
BC8
SOFTWARE
VAL B:33 , PHE B:35 , ASN B:36 , HIS B:40 , LYS B:43 , CYS B:50 , THR B:95 , CYS B:97 , CYS B:100 , HIS B:101 , LYS B:212 , LEU B:213 , ALA B:216 , HEM B:305 , HOH B:325 , HOH B:365 , HOH B:393 , HOH B:431 , HOH B:560 , HOH B:562 , HOH B:581
BINDING SITE FOR RESIDUE HEM B 303
18
BC9
SOFTWARE
GLN B:102 , THR B:105 , GLU B:110 , CYS B:111 , CYS B:114 , HIS B:115 , THR B:118 , THR B:119 , PRO B:120 , LYS B:121 , TRP B:126 , ILE B:208 , ASP B:211 , ALA B:214 , PHE B:217 , HIS B:218 , ILE B:223 , LEU B:224 , THR B:227 , HOH B:355 , HOH B:374 , HOH B:622
BINDING SITE FOR RESIDUE HEM B 304
19
CC1
SOFTWARE
ARG A:231 , PRO A:239 , SER A:243 , ACT A:294 , MET B:16 , PHE B:17 , PRO B:18 , ALA B:29 , MET B:30 , PRO B:32 , VAL B:33 , LEU B:76 , MET B:80 , HIS B:81 , CYS B:97 , TRP B:126 , CYS B:127 , CYS B:130 , HIS B:131 , HEM B:303 , HOH B:321 , HOH B:332
BINDING SITE FOR RESIDUE HEM B 305
20
CC2
SOFTWARE
HOH A:747 , VAL B:172 , ALA B:177 , PRO B:178 , PHE B:195 , HIS B:197 , LEU B:201 , LEU B:224 , CYS B:225 , CYS B:228 , HIS B:229 , LEU B:236 , LYS B:240 , CYS B:241 , TYR B:263 , HEM B:308 , HOH B:333 , HOH B:342 , HOH B:394 , HOH B:615 , HOH B:623
BINDING SITE FOR RESIDUE HEM B 306
21
CC3
SOFTWARE
CYS B:228 , HIS B:230 , ARG B:231 , LYS B:240 , CYS B:241 , CYS B:244 , HIS B:245 , GLY B:255 , ARG B:256 , PRO B:257 , ALA B:262 , LEU B:265 , GLU B:266 , HOH B:411 , HOH B:542 , HOH B:612
BINDING SITE FOR RESIDUE HEM B 307
22
CC4
SOFTWARE
CYS B:114 , ILE B:183 , SER B:193 , PHE B:195 , THR B:196 , HIS B:200 , SER B:203 , LEU B:204 , GLU B:266 , CYS B:267 , CYS B:270 , HIS B:271 , MET B:274 , PRO B:279 , HEM B:306 , HOH B:639 , HOH B:648 , HOH B:694
BINDING SITE FOR RESIDUE HEM B 308
23
CC5
SOFTWARE
ILE B:183 , ASP B:184 , ALA B:185 , LEU B:186 , ALA B:187 , ASP B:188 , LYS B:189 , TYR B:190 , MET B:260 , TYR B:263 , HIS B:264 , MET B:268 , HIS B:271 , ARG B:280 , ASP B:281 , CYS B:284 , CYS B:287 , HIS B:288 , HOH B:344 , HOH B:379
BINDING SITE FOR RESIDUE HEM B 309
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:42-291,B:42-291)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYC9_DESDA
72-323
2
A:42-291
B:42-291
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d19hca_ (A:)
1b: SCOP_d19hcb_ (B:)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Cytochrome c3-like
(70)
Protein domain
:
Nine-heme cytochrome c
(4)
Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
(3)
1a
d19hca_
A:
1b
d19hcb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_19hcA02 (A:1-99,A:130-167)
1b: CATH_19hcB02 (B:1-99,B:130-167)
1c: CATH_19hcA01 (A:100-129,A:168-292)
1d: CATH_19hcB01 (B:100-129,B:168-292)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(8)
1a
19hcA02
A:1-99,A:130-167
1b
19hcB02
B:1-99,B:130-167
1c
19hcA01
A:100-129,A:168-292
1d
19hcB01
B:100-129,B:168-292
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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