Help

Color codes    1. Nucleotides    2. Backbone ribbon    3. Helical axis    4. Atoms    Close window

Helix and bending analysis of nucleic acid double helix structures

 

1. Nucleotides

Residue	Color	RBG code
A, +A	Red	1.0-0.0-0.0
C, +C	Blue	0.0-0.0-1.0
G, +G,  I, +I	Green	0.0-1.0-0.0
T, +T	Yellow	1.0-1.0-0.0
U, +U	Magenta	1.0-0.0-1.0

 

2. Backbone ribbon

Residue	Color	RBG code
Backbone strand 1	Light blue	0.0-0.5-1.0
Backbone strand 2	Magenta-white	1.0-0.5-1.0

 

3. Helical axis

Geometrical object	Color	RGB code
Curvilinear axis	Green	0.0-1.0-0.0
Principle axis	White	0.0-0.0-0.0
Straight line	White	0.0-0.0-0.0
Arc	Blue	0.0-0.0-1.0
Kinked line	Red	1.0-0.0-0.0
Double kinked line	Gold	0.89-0.66-0.0

 

4. Atoms

Atom	Color	RBG code
Oxygen	Red	1.0-0.0-0.0
Nitrogen	Blue	0.0-0.0-1.0
Carbon	Green	0.0-1.0-0.0
Phosphorus	Magenta	1.0-0.0-1.0
Sulfur	Yellow	1.0-1.0-0.0