Keyword Search: Gene Ontology, PubMed or Web (Google)
PDB Keywords for 3OJ4
(Keywords from the PDB file are used here. They may or may not correspond to GO term names).
- Ubiquitin|Zinc Finger|Ubiquitin Conjugating Enzyme|Zinc Ion|Ligase-Protein Binding Complex [GO] [PubMed] [Google]
GO Keywords for 3OJ4
(Here all GO term names are given that map directly to this particular structure).
- negative regulation of transcription by RNA polymerase II [GO] [PubMed] [Google]
- ubiquitin ligase complex [GO] [PubMed] [Google]
- nucleotide binding [GO] [PubMed] [Google]
- protein polyubiquitination [GO] [PubMed] [Google]
- stimulatory C-type lectin receptor signaling pathway [GO] [PubMed] [Google]
- ubiquitin-protein transferase activity [GO] [PubMed] [Google]
- protein binding [GO] [PubMed] [Google]
- ATP binding [GO] [PubMed] [Google]
- nucleoplasm [GO] [PubMed] [Google]
- cytoplasm [GO] [PubMed] [Google]
- cytosol [GO] [PubMed] [Google]
- ubiquitin-dependent protein catabolic process [GO] [PubMed] [Google]
- protein ubiquitination [GO] [PubMed] [Google]
- transferase activity [GO] [PubMed] [Google]
- BMP signaling pathway [GO] [PubMed] [Google]
- anaphase-promoting complex-dependent catabolic process [GO] [PubMed] [Google]
- positive regulation of protein ubiquitination [GO] [PubMed] [Google]
- TRIF-dependent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- Fc-epsilon receptor signaling pathway [GO] [PubMed] [Google]
- proteasome-mediated ubiquitin-dependent protein catabolic process [GO] [PubMed] [Google]
- T cell receptor signaling pathway [GO] [PubMed] [Google]
- obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [GO] [PubMed] [Google]
- obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition [GO] [PubMed] [Google]
- obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [GO] [PubMed] [Google]
- regulation of transcription from RNA polymerase II promoter in response to hypoxia [GO] [PubMed] [Google]
- ubiquitin conjugating enzyme activity [GO] [PubMed] [Google]
- protein K48-linked ubiquitination [GO] [PubMed] [Google]
- G2/M transition of mitotic cell cycle [GO] [PubMed] [Google]
- negative regulation of transcription by RNA polymerase II [GO] [PubMed] [Google]
- MAPK cascade [GO] [PubMed] [Google]
- activation of MAPK activity [GO] [PubMed] [Google]
- protein polyubiquitination [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA damage recognition [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA duplex unwinding [GO] [PubMed] [Google]
- protease binding [GO] [PubMed] [Google]
- stimulatory C-type lectin receptor signaling pathway [GO] [PubMed] [Google]
- MyD88-dependent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- MyD88-independent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- protein binding [GO] [PubMed] [Google]
- extracellular space [GO] [PubMed] [Google]
- nucleus [GO] [PubMed] [Google]
- nucleoplasm [GO] [PubMed] [Google]
- cytoplasm [GO] [PubMed] [Google]
- cytosol [GO] [PubMed] [Google]
- plasma membrane [GO] [PubMed] [Google]
- glycogen biosynthetic process [GO] [PubMed] [Google]
- transcription-coupled nucleotide-excision repair [GO] [PubMed] [Google]
- nucleotide-excision repair, preincision complex assembly [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA incision, 5'-to lesion [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA gap filling [GO] [PubMed] [Google]
- DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest [GO] [PubMed] [Google]
- transforming growth factor beta receptor signaling pathway [GO] [PubMed] [Google]
- Notch signaling pathway [GO] [PubMed] [Google]
- I-kappaB kinase/NF-kappaB signaling [GO] [PubMed] [Google]
- JNK cascade [GO] [PubMed] [Google]
- fibroblast growth factor receptor signaling pathway [GO] [PubMed] [Google]
- endosome membrane [GO] [PubMed] [Google]
- regulation of tumor necrosis factor-mediated signaling pathway [GO] [PubMed] [Google]
- regulation of necrotic cell death [GO] [PubMed] [Google]
- ubiquitin recycling [GO] [PubMed] [Google]
- Wnt signaling pathway [GO] [PubMed] [Google]
- endosomal transport [GO] [PubMed] [Google]
- macroautophagy [GO] [PubMed] [Google]
- viral life cycle [GO] [PubMed] [Google]
- virion assembly [GO] [PubMed] [Google]
- translesion synthesis [GO] [PubMed] [Google]
- negative regulation of transforming growth factor beta receptor signaling pathway [GO] [PubMed] [Google]
- endocytic vesicle membrane [GO] [PubMed] [Google]
- anaphase-promoting complex-dependent catabolic process [GO] [PubMed] [Google]
- regulation of type I interferon production [GO] [PubMed] [Google]
- negative regulation of type I interferon production [GO] [PubMed] [Google]
- tumor necrosis factor-mediated signaling pathway [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA incision [GO] [PubMed] [Google]
- ion transmembrane transport [GO] [PubMed] [Google]
- TRIF-dependent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- interstrand cross-link repair [GO] [PubMed] [Google]
- NIK/NF-kappaB signaling [GO] [PubMed] [Google]
- Fc-epsilon receptor signaling pathway [GO] [PubMed] [Google]
- ERBB2 signaling pathway [GO] [PubMed] [Google]
- negative regulation of epidermal growth factor receptor signaling pathway [GO] [PubMed] [Google]
- error-prone translesion synthesis [GO] [PubMed] [Google]
- DNA damage response, detection of DNA damage [GO] [PubMed] [Google]
- positive regulation of apoptotic process [GO] [PubMed] [Google]
- negative regulation of apoptotic process [GO] [PubMed] [Google]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [GO] [PubMed] [Google]
- proteasome-mediated ubiquitin-dependent protein catabolic process [GO] [PubMed] [Google]
- myelin sheath [GO] [PubMed] [Google]
- regulation of mRNA stability [GO] [PubMed] [Google]
- cellular protein metabolic process [GO] [PubMed] [Google]
- innate immune response [GO] [PubMed] [Google]
- positive regulation of epidermal growth factor receptor signaling pathway [GO] [PubMed] [Google]
- positive regulation of transcription by RNA polymerase II [GO] [PubMed] [Google]
- T cell receptor signaling pathway [GO] [PubMed] [Google]
- positive regulation of NF-kappaB transcription factor activity [GO] [PubMed] [Google]
- stress-activated MAPK cascade [GO] [PubMed] [Google]
- obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [GO] [PubMed] [Google]
- obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition [GO] [PubMed] [Google]
- Wnt signaling pathway, planar cell polarity pathway [GO] [PubMed] [Google]
- regulation of transcription from RNA polymerase II promoter in response to hypoxia [GO] [PubMed] [Google]
- extracellular exosome [GO] [PubMed] [Google]
- nucleotide-binding oligomerization domain containing signaling pathway [GO] [PubMed] [Google]
- global genome nucleotide-excision repair [GO] [PubMed] [Google]
- error-free translesion synthesis [GO] [PubMed] [Google]
- intracellular transport of virus [GO] [PubMed] [Google]
- negative regulation of canonical Wnt signaling pathway [GO] [PubMed] [Google]
- positive regulation of canonical Wnt signaling pathway [GO] [PubMed] [Google]
- regulation of signal transduction by p53 class mediator [GO] [PubMed] [Google]
- B-1 B cell homeostasis [GO] [PubMed] [Google]
- protease binding [GO] [PubMed] [Google]
- response to molecule of bacterial origin [GO] [PubMed] [Google]
- regulation of germinal center formation [GO] [PubMed] [Google]
- negative regulation of chronic inflammatory response [GO] [PubMed] [Google]
- DNA binding [GO] [PubMed] [Google]
- catalytic activity [GO] [PubMed] [Google]
- ubiquitin-protein transferase activity [GO] [PubMed] [Google]
- thiol-dependent ubiquitin-specific protease activity [GO] [PubMed] [Google]
- protein binding [GO] [PubMed] [Google]
- nucleus [GO] [PubMed] [Google]
- cytoplasm [GO] [PubMed] [Google]
- lysosome [GO] [PubMed] [Google]
- cytosol [GO] [PubMed] [Google]
- proteolysis [GO] [PubMed] [Google]
- apoptotic process [GO] [PubMed] [Google]
- inflammatory response [GO] [PubMed] [Google]
- metabolic process [GO] [PubMed] [Google]
- peptidase activity [GO] [PubMed] [Google]
- cysteine-type peptidase activity [GO] [PubMed] [Google]
- zinc ion binding [GO] [PubMed] [Google]
- regulation of tumor necrosis factor-mediated signaling pathway [GO] [PubMed] [Google]
- protein ubiquitination [GO] [PubMed] [Google]
- protein deubiquitination [GO] [PubMed] [Google]
- hydrolase activity [GO] [PubMed] [Google]
- ligase activity [GO] [PubMed] [Google]
- kinase binding [GO] [PubMed] [Google]
- negative regulation of protein ubiquitination [GO] [PubMed] [Google]
- negative regulation of NF-kappaB transcription factor activity [GO] [PubMed] [Google]
- negative regulation of type I interferon production [GO] [PubMed] [Google]
- response to muramyl dipeptide [GO] [PubMed] [Google]
- negative regulation of interleukin-1 beta production [GO] [PubMed] [Google]
- negative regulation of interleukin-2 production [GO] [PubMed] [Google]
- negative regulation of interleukin-6 production [GO] [PubMed] [Google]
- negative regulation of tumor necrosis factor production [GO] [PubMed] [Google]
- negative regulation of toll-like receptor 2 signaling pathway [GO] [PubMed] [Google]
- negative regulation of toll-like receptor 3 signaling pathway [GO] [PubMed] [Google]
- negative regulation of toll-like receptor 4 signaling pathway [GO] [PubMed] [Google]
- negative regulation of toll-like receptor 5 signaling pathway [GO] [PubMed] [Google]
- protein K11-linked deubiquitination [GO] [PubMed] [Google]
- thiol-dependent ubiquitinyl hydrolase activity [GO] [PubMed] [Google]
- negative regulation of I-kappaB kinase/NF-kappaB signaling [GO] [PubMed] [Google]
- ubiquitin binding [GO] [PubMed] [Google]
- protein self-association [GO] [PubMed] [Google]
- positive regulation of protein catabolic process [GO] [PubMed] [Google]
- negative regulation of cyclin-dependent protein serine/threonine kinase activity [GO] [PubMed] [Google]
- negative regulation of bone resorption [GO] [PubMed] [Google]
- negative regulation of innate immune response [GO] [PubMed] [Google]
- metal ion binding [GO] [PubMed] [Google]
- negative regulation of smooth muscle cell proliferation [GO] [PubMed] [Google]
- regulation of defense response to virus by host [GO] [PubMed] [Google]
- regulation of inflammatory response [GO] [PubMed] [Google]
- negative regulation of inflammatory response [GO] [PubMed] [Google]
- negative regulation of B cell activation [GO] [PubMed] [Google]
- protein complex oligomerization [GO] [PubMed] [Google]
- negative regulation of cell death [GO] [PubMed] [Google]
- regulation of vascular wound healing [GO] [PubMed] [Google]
- extracellular exosome [GO] [PubMed] [Google]
- cellular response to hydrogen peroxide [GO] [PubMed] [Google]
- nucleotide-binding oligomerization domain containing signaling pathway [GO] [PubMed] [Google]
- negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway [GO] [PubMed] [Google]
- negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway [GO] [PubMed] [Google]
- K63-linked polyubiquitin modification-dependent protein binding [GO] [PubMed] [Google]
- protein K63-linked deubiquitination [GO] [PubMed] [Google]
- protein K48-linked ubiquitination [GO] [PubMed] [Google]
- protein K48-linked deubiquitination [GO] [PubMed] [Google]
- cellular response to lipopolysaccharide [GO] [PubMed] [Google]
- protein deubiquitination involved in ubiquitin-dependent protein catabolic process [GO] [PubMed] [Google]
- tolerance induction to lipopolysaccharide [GO] [PubMed] [Google]
- establishment of protein localization to vacuole [GO] [PubMed] [Google]
- negative regulation of osteoclast proliferation [GO] [PubMed] [Google]
- negative regulation of extrinsic apoptotic signaling pathway via death domain receptors [GO] [PubMed] [Google]
- positive regulation of cellular protein catabolic process [GO] [PubMed] [Google]
- positive regulation of hepatocyte proliferation [GO] [PubMed] [Google]
- negative regulation of CD40 signaling pathway [GO] [PubMed] [Google]
- negative regulation of endothelial cell apoptotic process [GO] [PubMed] [Google]
- G2/M transition of mitotic cell cycle [GO] [PubMed] [Google]
- negative regulation of transcription by RNA polymerase II [GO] [PubMed] [Google]
- MAPK cascade [GO] [PubMed] [Google]
- activation of MAPK activity [GO] [PubMed] [Google]
- protein polyubiquitination [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA damage recognition [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA duplex unwinding [GO] [PubMed] [Google]
- stimulatory C-type lectin receptor signaling pathway [GO] [PubMed] [Google]
- MyD88-dependent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- MyD88-independent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- protein binding [GO] [PubMed] [Google]
- extracellular space [GO] [PubMed] [Google]
- nucleus [GO] [PubMed] [Google]
- nucleoplasm [GO] [PubMed] [Google]
- cytoplasm [GO] [PubMed] [Google]
- mitochondrion [GO] [PubMed] [Google]
- cytosol [GO] [PubMed] [Google]
- plasma membrane [GO] [PubMed] [Google]
- glycogen biosynthetic process [GO] [PubMed] [Google]
- transcription-coupled nucleotide-excision repair [GO] [PubMed] [Google]
- nucleotide-excision repair, preincision complex assembly [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA incision, 5'-to lesion [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA gap filling [GO] [PubMed] [Google]
- DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest [GO] [PubMed] [Google]
- transforming growth factor beta receptor signaling pathway [GO] [PubMed] [Google]
- Notch signaling pathway [GO] [PubMed] [Google]
- I-kappaB kinase/NF-kappaB signaling [GO] [PubMed] [Google]
- JNK cascade [GO] [PubMed] [Google]
- fibroblast growth factor receptor signaling pathway [GO] [PubMed] [Google]
- endosome membrane [GO] [PubMed] [Google]
- regulation of tumor necrosis factor-mediated signaling pathway [GO] [PubMed] [Google]
- regulation of necrotic cell death [GO] [PubMed] [Google]
- Wnt signaling pathway [GO] [PubMed] [Google]
- endosomal transport [GO] [PubMed] [Google]
- macroautophagy [GO] [PubMed] [Google]
- viral life cycle [GO] [PubMed] [Google]
- virion assembly [GO] [PubMed] [Google]
- translesion synthesis [GO] [PubMed] [Google]
- negative regulation of transforming growth factor beta receptor signaling pathway [GO] [PubMed] [Google]
- endocytic vesicle membrane [GO] [PubMed] [Google]
- anaphase-promoting complex-dependent catabolic process [GO] [PubMed] [Google]
- positive regulation of protein ubiquitination [GO] [PubMed] [Google]
- regulation of type I interferon production [GO] [PubMed] [Google]
- negative regulation of type I interferon production [GO] [PubMed] [Google]
- tumor necrosis factor-mediated signaling pathway [GO] [PubMed] [Google]
- nucleotide-excision repair, DNA incision [GO] [PubMed] [Google]
- ion transmembrane transport [GO] [PubMed] [Google]
- TRIF-dependent toll-like receptor signaling pathway [GO] [PubMed] [Google]
- interstrand cross-link repair [GO] [PubMed] [Google]
- NIK/NF-kappaB signaling [GO] [PubMed] [Google]
- Fc-epsilon receptor signaling pathway [GO] [PubMed] [Google]
- ERBB2 signaling pathway [GO] [PubMed] [Google]
- negative regulation of epidermal growth factor receptor signaling pathway [GO] [PubMed] [Google]
- error-prone translesion synthesis [GO] [PubMed] [Google]
- DNA damage response, detection of DNA damage [GO] [PubMed] [Google]
- neuron projection [GO] [PubMed] [Google]
- neuronal cell body [GO] [PubMed] [Google]
- positive regulation of apoptotic process [GO] [PubMed] [Google]
- negative regulation of apoptotic process [GO] [PubMed] [Google]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [GO] [PubMed] [Google]
- proteasome-mediated ubiquitin-dependent protein catabolic process [GO] [PubMed] [Google]
- regulation of mRNA stability [GO] [PubMed] [Google]
- cellular protein metabolic process [GO] [PubMed] [Google]
- innate immune response [GO] [PubMed] [Google]
- positive regulation of epidermal growth factor receptor signaling pathway [GO] [PubMed] [Google]
- positive regulation of transcription by RNA polymerase II [GO] [PubMed] [Google]
- mitochondrion transport along microtubule [GO] [PubMed] [Google]
- neuron projection morphogenesis [GO] [PubMed] [Google]
- T cell receptor signaling pathway [GO] [PubMed] [Google]
- positive regulation of NF-kappaB transcription factor activity [GO] [PubMed] [Google]
- stress-activated MAPK cascade [GO] [PubMed] [Google]
- obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [GO] [PubMed] [Google]
- obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition [GO] [PubMed] [Google]
- regulation of mitochondrial membrane potential [GO] [PubMed] [Google]
- Wnt signaling pathway, planar cell polarity pathway [GO] [PubMed] [Google]
- regulation of proteasomal protein catabolic process [GO] [PubMed] [Google]
- regulation of transcription from RNA polymerase II promoter in response to hypoxia [GO] [PubMed] [Google]
- extracellular exosome [GO] [PubMed] [Google]
- nucleotide-binding oligomerization domain containing signaling pathway [GO] [PubMed] [Google]
- global genome nucleotide-excision repair [GO] [PubMed] [Google]
- error-free translesion synthesis [GO] [PubMed] [Google]
- intracellular transport of virus [GO] [PubMed] [Google]
- negative regulation of canonical Wnt signaling pathway [GO] [PubMed] [Google]
- positive regulation of canonical Wnt signaling pathway [GO] [PubMed] [Google]
- regulation of neuron death [GO] [PubMed] [Google]
- regulation of signal transduction by p53 class mediator [GO] [PubMed] [Google]
- positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator [GO] [PubMed] [Google]
- positive regulation of protein monoubiquitination [GO] [PubMed] [Google]
